Conserved Protein Domain Family
SET_SMYD4

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cd10536: SET_SMYD4 
SET domain (including iSET domain and post-SET domain) found in SET and MYND domain-containing protein 4 (SMYD4) and similar proteins
SMYD4 functions as a potential tumor suppressor that plays a critical role in breast carcinogenesis at least partly through inhibiting the expression of PDGFR-alpha. In zebrafish, SMYD4 is ubiquitously expressed in early embryos and becomes enriched in the developing heart; mutants show a strong defect in cardiomyocyte proliferation, which lead to a severe cardiac malformation.
Statistics
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PSSM-Id: 380934
Aligned: 35 rows
Threshold Bit Score: 121.251
Created: 10-Jun-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative active site [active site]
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens SETD2 binds H3K36M peptide and SAM.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                          ###                 #                                         
Q8IYR2       228 LSNASSSIGLCVDp---lKGRCLVATKd-ILPGELLVQEDAFVSVLNPgelppphhgldskwdtrvtngdlychrclkht 303 human
GAA53888     260 VPDPNSPIPFEVClgdggIGWQLVVKKs-VKPGELILVDKPYARRIHKdrvyshcyqcfrrslnlrpcrgcsevgfcsss 338 Clonorchis sine...
NP_610730    180 VPFIADCLELRETa---aEGRFVVTNRd-LAVGDLVSVEEPFCSTLLTpmryircatckrenyltlipcdsccstmfcse 255 fruit fly
GAA53887     307 ESHGTAAYKWTFGgq--kAGWHLQASRn-IEAGEVILIEKPYARRICRrfllkhcyqcfkrclnllpcrkcsevgfcste 383 Clonorchis sine...
XP_015783394 239 LHGAIESLELRWSe---eKGRCIRTTRp-LRPNTNIIAELPYAAWLQPthyefycayclkpldyrsfpcrqckmisycss 314 two-spotted spi...
CDS25416     240 VEHPERNLQFYNTm---tPARWTTVAArdLEAGEIVAVVKPFSNPLSAnmtkycfvclnrchslipckncanvgfcsdkc 316 Hymenolepis mic...
XP_015783391 242 IHGAVPYLSLSYEk---nKGRIIITQNd-IQKGTKLLVEEPFCTWLAPflysqycfrcfnvldnyffpcrkcvlvrycss 317 two-spotted spi...
XP_015781661 169 LKGVSSSVSLGNHe---iKRRQLLANSd-IPIGKVIAREGALCGWLSPimysmycyrcllmldnqritcqgcktvnycsl 244 two-spotted spi...
NP_499143     13 FPQLCDKVTVKWDk---kRGRFVEAIEd-IPIGTVVCVETGITVNVDPqncyrclkitenasfaycknceef-------- 80  Caenorhabditis ...
XP_023336589  43 ALSDKVEVSQSSH-----QKRELFSTGe-IGAGDILGIEKPVASVLEKefirtncwnclitlkapygcplcsavkfcskd 116 Eurytemora affinis
Feature 1                                                                                        
Q8IYR2       304 latvpcdgcsyakycsqeclqqawelyhrtecplggllltl-------------------------gvfchialrltllv 358 human
GAA53888     339 ceeaawmpdwssenstnsihgrpchrfecgqvhriqlddyagwkwfrshg--------aspgtsssssvpatigrycsel 410 Clonorchis sine...
NP_610730    256 ecksiamqtyhryecpiidf------------------------------------------------------------ 275 fruit fly
GAA53887     384 cektswlpdartksstssdvseapssvvrcchryecgqisrvdfydfagwqwmqqnelptgaskfvqryrmrlmvrppdr 463 Clonorchis sine...
XP_015783394 315 kcseaawtsyhsk------------------------------------------------------------------- 327 two-spotted spi...
CDS25416     317 akrarqdkmegdyypkrhkydcngvlpvifn---------------------------------------------cfnk 351 Hymenolepis mic...
XP_015783391 318 aceeeswksyhsyec----------------------------------------------------------------- 332 two-spotted spi...
XP_015781661 245 ecyklakkefhgkec----------------------------------------------------------------- 259 two-spotted spi...
NP_499143        --------------------------------------------------------------------------------     Caenorhabditis ...
XP_023336589 117 clreacstyhpsec------------------------------------------------------------------ 130 Eurytemora affinis
Feature 1                                                                                        
Q8IYR2       359 gfedvrkiitklcdkisnkdiclpesnnqvktlnyglgesekngnivetpipgcdingkYENNYNAVFNLLPHTENHSPE 438 human
GAA53888     411 qklhqddcvggskvswlafaciartaphtisdlvqscepnttspllafsglrqfptsgiHPDNYCAVGWLVSNSDKREIS 490 Clonorchis sine...
NP_610730    276 -------lnrmfnkihcialrttlvalnifpsieelidfceqeqnqdkcafdlnyneltPEEHYRAIHGLVTNQHLRSVS 348 fruit fly
GAA53887     464 nvvprsmtwlpfaciartdqkhlksliqdtlamstdgaqcasarllafssqnhclpldeTDDDYLSIGRLSVPGGRVAPQ 543 Clonorchis sine...
XP_015783394 328 --------------eckylpvlrhlamghlalkillitgfdeaieihrnpppasrhqrkFLNTFRDVYTLMDSPHVFDAP 393 two-spotted spi...
CDS25416     352 skpsffyrslshtvfnciantnprrlieyitatgkykngqshaafngineirtfqpnlwLSSNYASVAWLHPGTDSWKDQ 431 Hymenolepis mic...
XP_015783391 333 ------------qyisflrflgaghfalrclsvdgldesislyrkslqdkrkepklsrsFLNNYQDIFTLMSKDNNSAML 400 two-spotted spi...
XP_015781661 260 ------------dymemlkhisichftirlllvlephrvaavsadrfkddfplnfnlneNGDSFGNFLNLESGTSGVSQA 327 two-spotted spi...
NP_499143     81 -----------------------------------yepdeiacgefdelgifklaahlvFSYPFADIASLVQSSDPEPPS 125 Caenorhabditis ...
XP_023336589 131 -------------lltdiilsnrveswhlalravgskplsqilqvgsrtsgrngasglsSSGDLNALLNLDLPLRTESVE 197 Eurytemora affinis
Feature 1                                                                                #     # 
Q8IYR2       439 hkf------lcALCVSALCRQLEaaslqaipterivnss------------qlkaavtpelcpdvtiWGVAMLRHMLQLQ 500 human
GAA53888     491 dlw------qrTVAAVFLGHCLSyggypldwsegcfrdp------------iqkqrmprsqllpaswACACLLHHIQAVA 552 Clonorchis sine...
NP_610730    349 dlf------qrSVVCAVLKHFIIeytpvkeyl---------------------------ggeegvnfFTDLLFRHLQTSP 395 fruit fly
GAA53887     544 klw------qlTVAAVFLAHCLSaggyeldwekhcls----------------nmsdevstalpaswAAACLLHDLQTVS 601 Clonorchis sine...
XP_015783394 394 klts---ftacAVFMALLTHAMGlieeq-----------------------------------qidvIADIYLKLIDQIV 435 two-spotted spi...
CDS25416     432 kgqygsmlfdfAIASIFLAYCLYiggypmdwyasrni----------------rpdthrpskapaiwIAACFLYHFQATA 495 Hymenolepis mic...
XP_015783391 401 pk--------lAFLSKFIAHLACsmrlvq--------------------------------dgavfdLSCLLLKQFGIGY 440 two-spotted spi...
XP_015781661 328 dll------tfSCTSLFTSHLLRemsffdr-------------------------------nlpekpLVCSLISMMILIS 370 two-spotted spi...
NP_499143    126 ca-------pkALSTQDIEAIFQltpfpeigeafkapaiqnaikrivesletdenwgrldqisrtmtFTKALRIMAERSA 198 Caenorhabditis ...
XP_023336589 198 emk------krSIMAVFYLIILQmtgyfdttedvgklnp------------slssiqqmkgkendstLSEPELHVATLLE 259 Eurytemora affinis
Feature 1        # #######                                                 #####       #         
Q8IYR2       501 CNAQAMTTIqhtg--------------pkgSIVTDSRQv---------RLATGIFPVISLLNHSCSPNTSVSFi-STVAT 556 human
GAA53888     553 SNAHTFSVDayfnrsdyepqvdhpngsppeGVVLTDVFp--------fSIGSGLFPLLSLVNHSCNPNVNQVYmaDGSCG 624 Clonorchis sine...
NP_610730    396 SNMHGIDLV---------------------EQVNETKDd--------qTHSSGAYAFLSLINHSCAPNTVRIYe-GTKAY 445 fruit fly
GAA53887     602 LLATDLLQLeyttpsicrqfpnylnesnrgISLMKGHRl---------KVGFGIYPMQAILLHSCDPNTLTVTtnNGTAV 672 Clonorchis sine...
XP_015783394 436 LNGLAIYDD---------------------RGLDSQGIwsynssgvskKIGIGLYATTSLLSHSCNANCDRIFi-GSKVV 493 two-spotted spi...
CDS25416     496 INSFRCNEF---------------------VYWGNNKIr--------eYLSCAIYPAVSLINHSCNPSADYCFttDGTAV 546 Hymenolepis mic...
XP_015783391 441 LNSFFITDHgynql------------klpgTSVDEDTAk---------EIGMGLYASASLISHSCDPNCEKYFi-CDKIL 498 two-spotted spi...
XP_015781661 371 RNIFTLYDHkfrllq---------vpdspdALVEGKTK----------EIGYGLFYKTSLFNHSCRPNAHAVFf-GSSIL 430 two-spotted spi...
NP_499143    199 KNAHTIYSI---------------------EQIESQEDn--------lPMATGLFPISSIFNHSCTPNISGFF--VRNTF 247 Caenorhabditis ...
XP_023336589 260 KIIRATSSCsteich---------femggeEEWTTGKVt--------pVLGRSINPTLAMVPHSCYPTAARVCh-ANQTL 321 Eurytemora affinis
Feature 1           #          ######                  #####   
Q8IYR2       557 IRASQRIRkGQEILHCYGPHKSRMGvaeRQQKLRSQYFFDCACPAC 602 human
GAA53888     625 LFALHAIErNEALLSNYGYHYATHPlkeRRRSLLEQYHFSCQCDAC 670 Clonorchis sinensis
NP_610730    446 MFVLRPIKaGNVLYDNYGAHFAICSkeqRLKRLSLQYRFDCKCEGC 491 fruit fly
GAA53887     673 LFAMRPIKkGETLHRTFGVHYFHRDriwRRLTLLMAYNFECQCNAC 718 Clonorchis sinensis
XP_015783394 494 ISTKKVISkDSEITISYGPSMVQGYk-aRRKDIKENYYFDCLCDVC 538 two-spotted spider mite
CDS25416     547 LIVTKSLAkGAELTITYNGTYFEEDtqsRRDLLKTSFFFKCMCEAC 592 Hymenolepis microstoma
XP_015783391 499 ILSRAPIEkGEEITISYGPNAVVHSyhqRQALLESTHGFKCSCKLC 544 two-spotted spider mite
XP_015781661 431 VVATKPIPaKTEITISYGASYPDMKlkdRQEKLRNSFYFNCLCEQC 476 two-spotted spider mite
NP_499143    248 IFVSQGVRaREELLDSYGVTYHQHTfeqRTNFLASVSGFICHCESC 293 Caenorhabditis elegans
XP_023336589 322 LIAQKNMKaGERVTINYTAPFYAASrshRKEFLYTGFNLSCECEAC 367 Eurytemora affinis

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