3HEI,2HLE,1KGY


Conserved Protein Domain Family
EphR_LBD

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cd10319: EphR_LBD 
Click on image for an interactive view with Cn3D
Ligand Binding Domain of Ephrin Receptors
Ephrin receptors (EphRs) comprise the largest subfamily of receptor tyrosine kinases (RTKs). They are subdivided into 2 groups, A and B type receptors, depending on their ligand ephrin-A or ephrin-B, respectively. In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain a ligand binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyrosine kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis.
Statistics
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PSSM-Id: 198439
Aligned: 11 rows
Threshold Bit Score: 224.204
Created: 6-Jun-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ephrin binding
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:ephrin binding site [polypeptide binding site]
Evidence:
  • Structure:2HLE, human EphRB4 - Ephrin B2, contacts 4A
  • Structure:3HEI; human EphRA2 - EphrinA1, contacts 4A
  • Structure:1KGY, human EphB2-ephrinB2 complex, contacts 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                     #                     #### ##         # #  #                        
3HEI_M          2 VVLLDFAaa-ggELGWLTHPyg---------kgWDLMQNIMnd------mPIYMYSVCnvm------sgDQDNWLRTNWV 59   human
2HLE_A         10 ETLLNTKle-taDLKWVTFPqvd--------gqWEELSGLDee-----qhSVRTYEVCdvq-----rapGQAHWLRTGWV 70   human
1KGY_A          3 ETLMDSTta-taELGWMVHPps----------gWEEVSGYDen-----mnTIRTYQVCnvf------esSQNNWLRTKFI 60   house mouse
NP_001121577   25 VTILDTTqa-tsDLGWTASGt-----------gWTELTNHDet-----daDLRTFQVChir------spHQNNWLKTNFI 81   Ciona intesti...
NP_001121576   34 AILMDTRta-isDIGWAMSPgs----------dWTEANGPHpd-----grDRRMLVVCqik------kpHQNNWARTPYI 91   Ciona intesti...
NP_524625      85 VVLLDTTre--aTLEWTRYPygpqa----qtpgWVEESFTDfvk----giNWRSYVVCdva------yhNVNNWLWSPFI 148  fruit fly
ADY40658       31 VVLLDTSls-ttELRWKTYSnied-----deigWLEETYRGpeg----veNRRAYVVCnve------haNVDNWLRTPRI 94   pig roundworm
NP_001071692   29 VEILNTRnatsdLIGWNMTTyvnniedfspevkWDEVTFHQln------pSVRGFQICpdsqdtqsyktNVQNWLRSPYM 102  Ciona intesti...
NP_001071691   19 HVLYNTKva-tsDLDWALHPty---------gaWEELSGLDvd-----gnTIRYHQVCntg------mdEQDNWVRSPFI 77   Ciona intesti...
O61460         32 EVLFDLSkv-gsDLKWDQVSlrhd-----rddvWMEETWRNpaatdekhaNQRAYVTCnyd------miNPSNWLFSHFI 99   nematode
NP_001101327   34 EVLLDTTge-tsEIGWLTYPpg----------gWDEVSVLDdq-----rrLTRTFEAChvagl--ppgsGQDNWLQTHFV 95   Norway rat
Feature 1                       # #                                                        #      
3HEI_M         60 YRgeaeRIFIELKFTVRDCnsfpggasSCKETFNLYYAEsdld---------ygtnFQKRLFTKIDTIAPDEITvssd-- 128  human
2HLE_A         71 PRrgavHVYATLRFTMLEClslpragrSCKETFTVFYYEsdadta-----taltpaWMENPYIKVDTVAAEHLTrkrp-- 143  human
1KGY_A         61 RRrgahRIHVEMKFSVRDCssipsvpgSCKETFNLYYYEadfdla-----tktfpnWMENPWVKVDTIAADESFsqvd-- 133  house mouse
NP_001121577   82 NVtttqRVYVEIKFTIRSCdgir-gvvSCKETFNLYYLEsnhmnd------rrslrLNEDTYTKVDTIAADERFkp---- 150  Ciona intesti...
NP_001121576   92 PVdgaeRIYVEFEFTIRSCedvp-nvaTCKETFNLYYYEtdrdea-----tstfppWREGAYIKVDTIAADKRFk----- 160  Ciona intesti...
NP_524625     149 DRgsanRLYIEIQFTIRDCslfpgnalSCKETFSLLFYEfdaat-------repppWQTDSYRLIARIAAGEGRfn---- 217  fruit fly
ADY40658       95 ERdganRLHVEVTFTMRDCnefpgnarSCKETFRLYAMQvsgte--------vsntWNETHWDLIGRIAADTGRhsk--- 163  pig roundworm
NP_001071692  103 KLigrsRLYVELNFWMRECenk---dtICPETFKIYYAItshqs--------evpqLNESVFTKIDTVAAEDQFads--- 168  Ciona intesti...
NP_001071691   78 DAksaqRIYMDIEFSVMKCe-------ECRETFALYYYPsssdta-----tttfppWRENPYIKIDTLAAGERFdse--- 142  Ciona intesti...
O61460        100 EVktarRIYIELLFNTRDCdayl-npkSCKETFSVYLKQfktsrpgstkiekerfsEDIDNWKNIGRLARSNSNm----- 173  nematode
NP_001101327   96 ERrgaqRAHIRLHFSVRACsslgvsggTCRETFTLYYRQadepds-----pdsisaWHLKRWTKVDTIAADESFpassss 170  Norway rat
Feature 1                      ###                               ### #        
3HEI_M        129 ----------feaRHVKLNVEERSVGplt-----rkGFYLAFQDIGACVALLSVRVYYKK 173  human
2HLE_A        144 ----------gaeATGKVNVKTLRLGpls-----kaGFYLAFQDQGACMALLSLHLFYKK 188  human
1KGY_A        134 ----------lggRVMKINTEVRSFGpvs-----rnGFYLAFQDYGGCMSLIAVRVFYRK 178  house mouse
NP_001121577  151 ------------dTRVEANTETRMISpir-----srGLYIAFQDTGACMSIMHVRVYYKS 193  Ciona intestinalis
NP_001121576  161 ------------pGSAERNFETRDIGplt-----krGVYLAIQDTGACMALMHVRVYYKY 203  Ciona intestinalis
NP_524625     218 -----------qnSDVDINTEVKSIAvn------kkGVYFAFRDQGACISVLAVKVYYIT 260  fruit fly
ADY40658      164 ----------hesSAAAVNQEIRSYTvt------kdAAYFAFRDSGACISILNVKIFYEV 207  pig roundworm
NP_001071692  169 ----------nsdWTEVLNTEIVNIEipqsidishaGVYVAIVDKGACIALVSVRVYSIV 218  Ciona intestinalis
NP_001071691  143 -----------tvGAEGINKKTLVIGpls-----rrGFYIAAQDQGACMSIMSLKLYYYH 186  Ciona intestinalis
O61460        174 -------------TTETLGMEIDSDTk---------TIRIAFEEQGICLSLLNVKIYYRI 211  nematode
NP_001101327  171 sswavgphrtdqrVGLQLNVKERSFGplt-----qrGFYVAFQDTGACLALVAVKLFSYT 225  Norway rat

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