2YZS


Conserved Protein Domain Family
Cas1_I-B

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cd09722: Cas1_I-B 
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CRISPR/Cas system-associated protein Cas1
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain
Statistics
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PSSM-Id: 187853
Aligned: 25 rows
Threshold Bit Score: 413.532
Created: 7-Feb-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2YZS_A      3 VYYINSHGTLSRHENTLRFENA---------EVKKDIPVEDVEEIFVFAELSLNTKLLNFLASKGIPLHFFNYY-----G 68  Aquifex aeolicus
YP_022827   3 NFYITQDGEITRDGNTLYFVGK---------DFKRHLPVMNVNEIIISAKVSISSWALDYLSKLGIMVHILNIY-----G 68  Picrophilus torrid...
YP_022781   3 TYYIISSGTLNREMDSLRFSNS---------NENKIIPLENIESIIISGNVSITKPAISILSKKNIPVFFMSMY-----D 68  Picrophilus torrid...
NP_071257   5 NYYLVSDGKLRRHENTIYFENE---------DGKRPIPINSIYAIYALGSLSITSKAISLLAKEGVCIHFFNRY-----G 70  Archaeoglobus fulg...
YP_447468  12 PLYINSNGILYRKENTLKFKNK---------EVDTSIPIHAINEINCYGKVSLRSGAISLLQKEKIIINFFNKY-----G 77  Methanosphaera sta...
NP_963311   3 TIYILSIGKLYRGKNGLYFINKd--------KKKSPIPLESIKEIFILNKVSVTYNALKLLADRNIPIHFFYENtkkgiS 74  Nanoarchaeum equit...
NP_142174   4 PIYITQPGILERKANTLFFVNE---------EMKRALPINTISEIHCFAPVTLTSGAIKLLSDNDVPVHFYNKY-----G 69  Pyrococcus horikos...
NP_247352   5 SLTLLSDGYLFRKENTIYFENA---------RGKKPLAIEGIYDIYIYGKVSISSQALHYLAQKGIALHFFNHY-----G 70  Methanocaldococcus...
NP_782083   4 TRYITSVGELKRKDNSLCFRKN---------NKNVYIPVENTKEIYCMSEVNINSKLLDFLSQNNIIMHFFNYY-----E 69  Clostridium tetani...
YP_099827   4 TYYLFNPGELERKDNTLKFTPIsedgsensvGGPRYLPVEDINEFYVFGSLRANSSLYNFLGQKDIAVHFFDYY-----Q 78  Bacteroides fragil...
2YZS_A     69 YYTGTFYPRESSVSGHLLIKQVEHYldaQKRLYLAKSFVIGSILNLEYVyk---------isADTYLNKVKEtn------ 133 Aquifex aeolicus
YP_022827  69 NYMSSLIPGNRNEKGNIIIMQVRSYl-nDDRLYIASQMVLGIKHNILRNlryyn----knnaLDDKIEKISGyypd---- 139 Picrophilus torrid...
YP_022781  69 NYISSLIPEDYLLSGKVIMNQAIKAyniDERIKIARIFVYAAARNMAIVlkrg-----nmgkIKIPYKEIMEsk------ 137 Picrophilus torrid...
NP_071257  71 YYIGSFYPRESLVSGEVVLRQAEHHldsEKRLHLARAFVEGAILNMARVlkkae---qddsdVIASLQHLSSak------ 141 Archaeoglobus fulg...
YP_447468  78 YYEGSLYPKIALNSGVIVVKQALTYnneNKRCFIAKEMVNGMKHNMIKTlkyyk---kkgkdVDEHIQNLENesil---- 150 Methanosphaera sta...
NP_963311  75 YYLGSFLPRQKTKSGLVLVKQVEAYkdiEKRTEIALEIVDAIRYNCIKVlekyh---idevkELRKIDVWKMfeeslndw 151 Nanoarchaeum equit...
NP_142174  70 YYRGSYLPAESQISGSIVVAQASHYidnEKRLYIAREILEGTRASMISLlks-------qraEYKDLADIDLkg------ 136 Pyrococcus horikos...
NP_247352  71 YYDGSFYPRESLHSGYLVVNQVEHYldkDKRLELAKLFIIGGIKNMEWNllkfk----nktkFSSYIEELNNcn------ 140 Methanocaldococcus...
NP_782083  70 GYSGTFYPREHYNSGKLLVKQVETYe--NRRLEVAKSIVEAIGDNIYELlyhyyk--hdkkeVKETLDWIKNhskinlkk 145 Clostridium tetani...
YP_099827  79 NYTGSFMPKDSLLSGKMILAQTSAYqnkKKRIVVAQKFIEAASWNMLKNlqyynrrgkdmedLMDAIKKYASqlsa---- 154 Bacteroides fragil...
2YZS_A    134 --sIPELXSVEAEFRKLCYKKLEEVTg--WELEKRTKRPPQNPLNALISFGNSLTYAKVLGEIYKTQLNPTVSYLHEPST 209 Aquifex aeolicus
YP_022827 140 gnnINSILGTEGNIWSTYYSAFPYIYk-kYHEFKREFHPPKDELNAMISFGNSLLYSNVITSIFLNGLNPSISYLHEPSE 218 Picrophilus torrid...
YP_022781 138 --sINELMSYEGNFRNNFLNIVDQYLpnnYKIIKRSRRPPRNKMNALISYLNMLLYSITESQIFLTHLNPAISFLHEPFE 215 Picrophilus torrid...
NP_071257 142 --sIVELMGAEAAARNAYYTKFDEILk-nFEFGKRSRMPPENEVNAMISFGNSLLYSAVLSEIYHTQLNPAISYLHEPSE 218 Archaeoglobus fulg...
YP_447468 151 dgnINRILSSEGKLWQSYYPSFDNITk-kFPIEKREFKPPKNEMNSLISYGNSLLYTTTLSEIYHTYLHPSISFLHEPRE 229 Methanosphaera sta...
NP_963311 152 kdaINIIRGIESNIWNLFYQGLDKILk-lYKLERRTRRPPKNEANTIVSFANTLLYGVTLTEIYKTHLDPTISFLHELRD 230 Nanoarchaeum equit...
NP_142174 137 -esIEELMGIESQLWKTFYAHFSHLLk-fFNFDERNRRPPRDEINAMISYGNSVLYTVTLSEIRKTYLHPGISYLHEPRE 214 Pyrococcus horikos...
NP_247352 141 --kITEVMNVEGRVRTEYYRLWDETLpddFKIVKRTRRPPKNEMNALISFLNSRLYPAIITELYNTQLTPTVSYLHEPHE 218 Methanocaldococcus...
NP_782083 146 andIKQIMQVEGETWQRFYGEFKNILpeeFVMNKRVKRPPDNPINALISFGNTLLYGKTITAIYNTHLDQRISFLHEPSE 225 Clostridium tetani...
YP_099827 155 ttcVQELMGLEGMIRQTYYDAFNLILn-dYEMGGRSKQPPKNEVNALISFGNMMCYTMCLRAIHQTQLNPTISFLHTPGE 233 Bacteroides fragil...
2YZS_A    210 KRFSLSLDVAEVFKPIFVDNLIIRLIQENKId-KTHFSTElnXTFLNEIGRKVFLKAFNELLETTIFYPklNRKVSHRTL 288 Aquifex aeolicus
YP_022827 219 RSFSLALDISDIFKPVIVERVIANLVNNNIId-SNHFTKEnnGYYLNDNGRKIFINYYNQKMNSTINIK--GNYVSYSRV 295 Picrophilus torrid...
YP_022781 216 RRNSLSLDVSEIFKPLICDRLAIKMVKLKIIk-DSDFLEEn-GVFLNENGRKKVVKMFDDKMQETVYSSslKRYVSYKYL 293 Picrophilus torrid...
NP_071257 219 RRFSLALDIAELFKPVIVDRLIFYLVNNGIVt-ESDFDSRlgGILLSEEGKKKFVRHFNERLEKTVKHRklNRKVSYQRL 297 Archaeoglobus fulg...
YP_447468 230 RRFSLACDLADIFKPLIISRTIFKLVNTNIIn-EKHFKKDv-GVYLNEKGRQKFIQEYNNKLKTTIKHPqiKKKVSYRYL 307 Methanosphaera sta...
NP_963311 231 TRYSLALDLSENFKPIITFRILIWLVNQGIIk-DTHFVKGlnGVLLNEQGKKLVIKEFNKRLDETIKLKs-GLKRSMRWY 308 Nanoarchaeum equit...
NP_142174 215 RRYSLALDLAEIFKPIVVFRVILRLVNKRIIr-EEHFVRDv-GVLLNSEGVKIFLGGINDELSRKVLHPtlRRKVSVRYL 292 Pyrococcus horikos...
NP_247352 219 RRFSLALDLSEIFKPMIADRLANRLVKQGIIq-KKHFRDDlnGVLLNKEGMKVVLEHFNKEMDKTVNHKklKKNVSKRRL 297 Methanocaldococcus...
NP_782083 226 GRFSLSLDISEAFKPVIVFKTIFDLVNNKRIqvSKHFDKKlnYCLLNDEGRNIFITAFEERMESIFLNEklKRKISYKTA 305 Clostridium tetani...
YP_099827 234 RRYSLALDIAEVFKPVIIDRVIFKVLNKKEIq-EKHFDWKlnKCLLNQTGKKIFVKAIEDKLIETIKHRilNRNVSYRHL 312 Bacteroides fragil...
2YZS_A    289 IKLELYKLIKHLLEEEVYLPLN 310 Aquifex aeolicus
YP_022827 296 IDMEVQKLIRHLKMNEKYIPFK 317 Picrophilus torridus DSM 9790
YP_022781 294 IRLELYKIEKYILEEKRYKPYI 315 Picrophilus torridus DSM 9790
NP_071257 298 IRLECYKLVKHFTAVEKYSPFV 319 Archaeoglobus fulgidus DSM 4304
YP_447468 308 IRLEGYKLIKHILEDKTYESFK 329 Methanosphaera stadtmanae DSM 3091
NP_963311 309 IKAQAYNLERFLLDGRKFKAFR 330 Nanoarchaeum equitans Kin4-M
NP_142174 293 IRLEAYSLLKHLIGDKEYKSLR 314 Pyrococcus horikoshii OT3
NP_247352 298 IRLEAYKLVKHLVGQKRYEPLV 319 Methanocaldococcus jannaschii DSM 2661
NP_782083 306 IKLDCYKLIKFILENKEFKPFS 327 Clostridium tetani E88
YP_099827 313 IKLECYKLAKHLLEIEEYKPFK 334 Bacteroides fragilis YCH46
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