Conserved Protein Domain Family
CESA_NdvC_like

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cd06435: CESA_NdvC_like 
NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase.
NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Statistics
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PSSM-Id: 133057
View PSSM: cd06435
Aligned: 8 rows
Threshold Bit Score: 441.069
Threshold Setting Gi: 78498018
Created: 20-Jun-2008
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Ligand bindingDXD motif
Feature 1:Ligand binding site
Evidence:
  • Comment:Predicted ligand binding site based on similar proteins.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           # #                                                                         
AAY36383    396 SLHVPCYNEPPDMVKRTLDSLQTLDYpdfEVLVIDNNTQDPAIWKPIERYCqq----lGPRFRFFHvsplpGFKAGALNY 471  Pseudomonas syr...
ABB44558    460 SIHVPAYKEQPAVLKETLEALANLRYtnfEVLVIINNTPEDFYKTPIKELCee----lGERFVYLDie-ctGFKAGALNR 534  Thiomicrospira ...
ZP_01915243 426 SIHVPAYEEPPEMLIDTLNALARLDYphfEVIVVDNNTKDEATWQPVQAHCqhldqqpNKRFRFFHvsplsGYKAGALNF 505  Limnobacter sp....
CAM74388    433 SLHLPCYNEPPEMVKLTLDSLLALDYpnfEVIVLDNNTKKEEVWKPVEAYCaq----fPDKVKFYHlapwpGAKAGALNF 508  Magnetospirillu...
NP_947997   476 SIHVPAYFEPPEMLKQTLDALARLDYpnfEVVVIINNTPDPAFTQPIQDHCre----lGERFKFINaekvkGFKAGALRI 551  Rhodopseudomona...
YP_922539   179 SLHVPAHEEPPEMVIETLESLRGLDYehyEIIAIDDNTTDESLWRPVEAWCaa----hGVKFAHLEdw--pGYKSGALNY 252  Nocardioides sp...
CAG75197    176 TIHLPCYSEPPEIVINTLNSISALDYdnyEVIVIDNNTRDETLWKPVEKHCsm----lGEKFRFYHvpvlaGAKAGALNY 251  Erwinia carotov...
NP_923926   175 CLQVPCYAEPPEVVTATLDRLAALRYpnfEVMVIDNNTKDPNLWKPVEAYCeq----lGERFRFFHvdplaGAKAGALNW 250  Gloeobacter vio...
Feature 1                         #                                                             
AAY36383    472 LLRHTAEd-aEVVAVIDADYCVHRQWLkhmvphfTDPKVAVIQSPQDYRDghesLFKCCCQAEYRGFFNIGMVIRNdhda 550  Pseudomonas syr...
ABB44558    535 ALEFTNPt-cEILAVIDADYVIKPNWLidlvpifDDAKVALVQAPQDHRDgnesLLKRAMNAEYAGFFDIGMVERNeena 613  Thiomicrospira ...
ZP_01915243 506 ALERTSPq-aEVVAVIDADYKVLPHWLkhlapefEKPEIAIVQAPQDYRDgvdsAFKSVCYAEYKGFFHLGMVTRNerna 584  Limnobacter sp....
CAM74388    509 GLSVTDPe-aEIIGVVDSDYQVRRDWLsslvpyfEDPKVGHVQAPQDHRDwerdLFKEMINWEYAGFFDIGMVFRNeana 587  Magnetospirillu...
NP_947997   552 AMERTAVd-aEIIGIIDADYVVTPDWLkdlvpafDDPRVGLVQAPQEHRDgdrsLMHYIMNGEYAGFFDIGMVQRNeyng 630  Rhodopseudomona...
YP_922539   253 ALREMTDdraELIGVVDSDYQLEPDFLarcaplfADPRVGFIQSPQDYRDwegaPFYRRLYYSYKYFFSVSQPSRNerdg 332  Nocardioides sp...
CAG75197    252 ALKITSSd-tELIAVIDADYITEPDFIrryvkifKDENVGFVQTSHDYYNhqssPVMEGAYYFWTLFHKIELPSYTeina 330  Erwinia carotov...
NP_923926   251 AMERVAGd-vEIIGVIDADYHAEPDFLssllahfDEPRMGFVQTPHDYRGwensLYQRMCYWEYKTFFATTMPSLNekda 329  Gloeobacter vio...
Feature 1                                                                                       
AAY36383    551 IIQHGTMTLIRRSALDRLg-WAEWCICEDAELGLRMLESGfstgYAAISYGKGLTPDTFMDFKKQRYRWAYGAMQIVKRH 629  Pseudomonas syr...
ABB44558    614 IVAHGTMIMVRKSAFDEVgqWNTDTIVEDSELGLRLFEAGyighYTNRRYGHGLLPDTIEAFKNQRHRWAYGAVQILKKH 693  Thiomicrospira ...
ZP_01915243 585 IIQHGTMTMVRRSVLEQVgcWGVSTITEDTELGLRIFEQGheavYIDQSYGHGLIPDTFTDYKKQRHRWAYGAMQILREH 664  Limnobacter sp....
CAM74388    588 IIQHGTMTLVRKKAMDDAgkWAEWCIVEDAELGLRMMKLGyesvYIQERMGHGLVPDSFMAYKKQRFRWAYGAVQILKAH 667  Magnetospirillu...
NP_947997   631 IIVHGTMCLIRRAAMDMAggWSSDTICEDSDLGLEIMEHGwlthYTNTRYGYGLLPDTYEAFKKQRHRWAYGGFQIIKKH 710  Rhodopseudomona...
YP_922539   333 AIFAGTMGLIRRQALEDVggWDEWCITEDAELSLRVLRAGwsgmHVDASFGHGVMPLTFEALKGQRFRWCFGGIQILRMH 412  Nocardioides sp...
CAG75197    331 AFTVGTMCILRRNILEKVggWDETALTEDSELAVRMHAQGyigyVFADTVGRGLIPTTFSDMKKQQVRWTAGPVQQLLKH 410  Erwinia carotov...
NP_923926   330 GLTVGTMCLIRRRALDEAggWSEWCQTEDSELAIRIHALGytsvFVPQTFGRGLIPETFAGYKKQRFRWTFGPVQEFKQH 409  Gloeobacter vio...
Feature 1        
AAY36383    630 A 630  Pseudomonas syringae pv. syringae B728a
ABB44558    694 W 694  Thiomicrospira denitrificans ATCC 33889
ZP_01915243 665 A 665  Limnobacter sp. MED105
CAM74388    668 W 668  Magnetospirillum gryphiswaldense MSR-1
NP_947997   711 W 711  Rhodopseudomonas palustris CGA009
YP_922539   413 W 413  Nocardioides sp. JS614
CAG75197    411 W 411  Erwinia carotovora subsp. atroseptica SCRI1043
NP_923926   410 L 410  Gloeobacter violaceus PCC 7421

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