3BIL,3EGC


Conserved Protein Domain Family
PBP1_LacI-like

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cd06299: PBP1_LacI-like 
Click on image for an interactive view with Cn3D
ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum produces significant amounts of L-glutamate directly from cheap sugar and ammonia
This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Statistics
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PSSM-Id: 380522
Aligned: 17 rows
Threshold Bit Score: 305.357
Created: 20-Jun-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative liganddimer interface
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on structural similarity to other members of the LacI family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 ##  #                                             #                 
3BIL_A     68 TIGVIVPSLiNHYFAAMVTEIQSTAskagLATIITNSnedaTTMSGSLEFLTSH-GVDGIICVPneecanqledlqkqGM 146 Corynebacterium gl...
3EGC_A     10 VVGLIVSDIeNVFFAEVASGVESEArhkgYSVLLANTaediVREREAVGQFFER-RVDGLILAPsegehdylrtelpkTF 88  Burkholderia thail...
CDO08970   62 SIGLIVSDVaNPFFADLAGEIQRAAarhrYSLVLCNSdedpDRQDDYLAALLAGrRVDGVIVVPtaamtpglrqagatRA 141 Mycobacterium cosm...
PFG67065   61 VLGLVVSDVsNPFFAELAHAAATAAqehgYALLLANSdedpANERAHLKTFATQ-RIDGLMITPtgrdagpfaslvaeRF 139 Propionibacteriace...
SEW34040   68 TLGLLVPDVrNPFFTDLAYHVDKAAaqrgLAVMMGSAdeqaGQQDRYLNVLTGH-HVDGIIAVPqgaaset-lvrtaaSV 145 Austwickia chelonae
SDC94785   61 VLGLLVSDIrNTFFSELAHAAEQEArahgYTLLLANAnedaEQADAVIDAFASQ-RIDGLLLSPqgpknprlealiasKL 139 Glycomyces harbine...
NP_696915  63 TVGLLVPDLrNPYFADLVSSMEDELyargYSTLIGTSaetvERQDAFIDNLLGQ-RIDGAIVVPqgvnspgmqsliarEL 141 Bifidobacterium lo...
OZG67740   63 TVGILVPDInNSYFAYLISLITRELlasgYVCMIGSSseslEGQDKFLHSLLTQ-RIDGAILVPqgtashglqrfvasGL 141 Bifidobacterium sp...
CQB85580   63 TVGLLVPDIrNAYFAELAYTVQDSLfeagYCAFIGTSsesaSRQDSFITSILSQ-RIDGAIIVPqgevteamrklieqRL 141 Chlamydia trachomatis
CAE49173   84 TIGIVLPNIrNPYFNQLASAIQEAAslkgYCCMMANSaespELINSALDILNSQ-QVDGIIVVPhiqsaqqitaiteqGT 162 Corynebacterium di...
Feature 1          #                      #                                    #              
3BIL_A    147 PVVLVDrelpg---------dstipTATSNPqPGIAAAVELLAhnnALPIGYLSGpmd-tstGRERLEDFKAACansk-- 214 Corynebacterium gl...
3EGC_A     89 PIVAVNrelri----------pgcgAVLSENvRGARTAVEYLIargHTRIGAIVGsag-lmtSRERLKGFRAAMsaagl- 156 Burkholderia thail...
CDO08970  142 RIVLLDrpvaltsrdaatkhlaqspIVRSDArEALDEVAELLTglgHRRIGIIAPplq-tqvGQERRDLLVDALvrrgv- 219 Mycobacterium cosm...
PFG67065  140 PLVFLDreipg----------ldvpSITVDNaTGIQQAVNWLAqrgRRSIAYVGGpvs-vttGTERLAAFRQSMtaagl- 207 Propionibacteriace...
SEW34040  146 PTVLVDrdpgi----------pgvpTVTSDNhGGMTALVDHVVslgRRRIGVVAGpqt-tstGRERLDALRGRLaehgi- 213 Austwickia chelonae
SDC94785  140 PVVLLNrsidg----------vdlpLYGTDNaGGVAQALAWLQrrgHRDVAFVGGpes-fstGAERHDAYLAGReahgi- 207 Glycomyces harbine...
NP_696915 142 PLVFVDrlvsg---------vnsvpFVVSDPyPGVCEAVAELVrlgHRHIGFVSHsslgssnINEREAAFRSAVaqvtql 212 Bifidobacterium lo...
OZG67740  142 PLVILDrkvkela------dggripIIDADPrPGITDAIEKVKsqgHSRIGFIHGptskspnLLERQQIFIDVAgsrv-- 213 Bifidobacterium sp...
CQB85580  142 PMLFMDrhvepqa-----gglehvpVVDSDPtKGIRDALLDVLqhgFHSVGYISGpiiaspsLQEREQAFRTVAseifg- 215 Chlamydia trachomatis
CAE49173  163 PIVAADrtvth----------savpSVTSDPlPAMKEALRMLSlnpGASIGYLAGpqd-tstGRERLEAITSIKselg-- 229 Corynebacterium di...
Feature 1                #                                                      #             
3BIL_A    215 -igeqLVFLGGYeqSVGFEGATKLLDqg--akTLFAgDSMMTIGVIEACHKAglvi-gkdVSVIGFDTHPLFALqpHPLT 290 Corynebacterium gl...
3EGC_A    157 pvrqeWIAAGGVraDNGRDGAIKVLTgadrptALLTsSHRITEGAMQALNVLglry-gpdVEIVSFDNLPWMAFldPPLP 235 Burkholderia thail...
CDO08970  220 prrsiTVAEGDFrqDSGATATAQLLArrqpptAIFAaDGLMAVGALKGLRSAglqv-prdVSLVGFDDAPWFDLfdPPLT 298 Mycobacterium cosm...
PFG67065  208 evdetLLAEGDFrvHSGVAAAHRILTqga-pdAFLSaDGLMTLGILQALQQSqpr--aggLDLVSFDDSPWFEFttPPIS 284 Propionibacteriace...
SEW34040  214 elptnRIAEGDFqlESGLTATAQLLAggd-ldAIVAaDNLMGLGAIMVLRQEgigi-gddMALACVDDIPWFSLvdPAIT 291 Austwickia chelonae
SDC94785  208 stddaLIDAGDFlaDGAAEAMLRILDrgtrptAVFGaNGQTTLGAMRALRERlgaeaasrIEIVSFDDVEWFAFtsPPVS 287 Glycomyces harbine...
NP_696915 213 gegtaAVVDCDStyVSREAGLNELVRag--vtAIICaYSPDMITMIGLLHDRgidi-gseMSVISFDDIAVFRLltPQVA 289 Bifidobacterium lo...
OZG67740  214 --gslNAIVASH--VNALSAIKDLLSrh--vnTFIFgYSPDALEAIRYFHHIglki-gedVSIVSFDDIPIFELasPSIS 286 Bifidobacterium sp...
CQB85580  216 -eehvFVESTGFdqSSCASVMHRMINvg--vkALIIgYSPDALRVMQVMAQEglvi-gkdISLISFDDVEVFRLatPRIS 291 Chlamydia trachomatis
CAE49173  230 -ipspDVYFGGYssEAGFAGTHELLDrg--vnSILTgDMMMTVGAIQAIYARglri-gkdVALIGYDNTPAFLLqeQPIT 305 Corynebacterium di...
Feature 1        #                                            
3BIL_A    291 VIDQNvEQLAQRAVSILteliag------tvpsvTKTTIPTALIHRES 332 Corynebacterium glutamicum ATCC 13032
3EGC_A    236 VVEQPtRRIGQEAMRMLihmie-------gtgnaTEMRLQTRFVTHVG 276 Burkholderia thailandensis E264
CDO08970  299 AIAQPiVALASAAVDAMlalla--------gesaLGSQPACQLVHRGS 338 Mycobacterium cosmeticum
PFG67065  285 AIVNDaTAIGRSGVTALiallg--------ggtaDSIRVPARFRARVG 324 Propionibacteriaceae bacterium ES.041
SEW34040  292 VIAQDvSRLGEVAVELLqaqad--------ghtvESVVVPMHLIPRTS 331 Austwickia chelonae
SDC94785  288 AVCNDaPEIGRAGVRGLldlig--------ggtaTSQRIATSFIDRSE 327 Glycomyces harbinensis
NP_696915 290 IISQQaEDMGRQGVDMLldmiin-----ndcsrgESRYVPSSFVLRDS 332 Bifidobacterium longum NCC2705
OZG67740  287 VISQQqKLMGNYGVTTLlslmehrlrgeeaeesfDNVRIPTLFIDRES 334 Bifidobacterium sp. LMG 28769
CQB85580  292 VISQQvQRIGHISAALFldmle-------nngdvKSQRVETVYIPRES 332 Chlamydia trachomatis
CAE49173  306 TIDQQvDDMGQRAFDMLyshmn-------ngeraTSCVIPTTLALRAS 346 Corynebacterium diphtheriae

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