Conserved Protein Domain Family
M28_like_PA_PDZ_associated

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cd05663: M28_like_PA_PDZ_associated 
M28 Zn-peptidase containing a protease-associated (PA) domain insert and associated with a PDZ domain
Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins, many of which contain a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate. Proteins in this subfamily are also associated with the PDZ domain, a widespread protein module that has been recruited to serve multiple functions during the course of evolution.
Statistics
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PSSM-Id: 349913
Aligned: 6 rows
Threshold Bit Score: 329.029
Created: 1-Oct-2007
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
metal binding
Feature 1: metal binding site [ion binding site], 6 residue positions
Conserved feature residue pattern:H D E E D [NH]Click to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
ABB86529       33 VEYLSSDELEGRSTGSKGEELAANYIEKRFKELNVEPIgen-gyFQEFSFKQKshphdtist------------------ 93   uncultured Ba...
NP_866403     103 LRYLTSEELAGRSAVGPEILKAADYIADRYRQMGLETRlygdspMQPVEMATGsqptsaeenglrwwstgeepdeiqldd 182  Rhodopirellul...
NP_867073     457 VDYLTRPELGGRLTGTPGEKRATAYVAAYLESLGFVPAgqngtfFHDFEFPAGstlgpaneltittsspggdsattdakl 536  Rhodopirellul...
CAJ70990      422 VAYLASDELEGRLTGTKGSKMASDYIAHRLEKIGILPVdkngnyFQGFPFTSGvevmpegnflhiaksgkandtksfele 501  Candidatus Ku...
YP_446822       1 MGYLSADLLRGRETGTKGARLAAQYLVQRFRELGLAPGlds-twTQPFDVTYSpnphaps-------------------- 59   Salinibacter ...
WP_002645582   67 IKYLASDELEGRGVDTQGINQAADFIAREFQQAGLNVKvieegaFQKFTINTGsklgpvnqleltgpdgktiplkydhdf 146  Gimesia maris
Feature 1                                                                                         
ABB86529          --------------------------------------------------------------------------------      uncultured Ba...
NP_866403     183 qfmplaigatrgdieadivwvgygiqapdrgyddyaavkqsqdaitadskgsvegkivmmlrkepgfadpnspfdglknt 262  Rhodopirellul...
NP_867073     537 teswtplsfsqtgdiesgevvfagyglqvpgdeendeydsyvhlnvadrwvlvlrdlpqdisaeqrqrmaryg------- 609  Rhodopirellul...
CAJ70990      502 kdfrplaftasgvadgelvfagygismpgedgagydsyagidvkdkvvlvlnyipekvemkrrhdlnrysglr------- 574  Candidatus Ku...
YP_446822         --------------------------------------------------------------------------------      Salinibacter ...
WP_002645582  147 racsfggsgkfdaelvfcgygidaddlkyndyadvdvkdkvviimrrtpqqgdkkspfagahgisryaalrykvstafgk 226  Gimesia maris
Feature 1                                                                                         
ABB86529          --------------------------------------------------------------------------------      uncultured Ba...
NP_866403     263 rhaffdtkistaidqgavgvlfvndpasvelalkavdnqyaaedrrleallaqrnalpaeatnlrssltekidqvqemls 342  Rhodopirellul...
NP_867073         --------------------------------------------------------------------------------      Rhodopirellul...
CAJ70990          --------------------------------------------------------------------------------      Candidatus Ku...
YP_446822         --------------------------------------------------------------------------------      Salinibacter ...
WP_002645582  227 gakailfvndyysteenkke------------------------------------------------------akeleq 252  Gimesia maris
Feature 1                                                                                         
ABB86529          --------------------------------------------------------------------------------      uncultured Ba...
NP_866403     343 nrereqaranwgllgsaeagtrprkgdekitdpetgktatrpaipvasisrevadrllkqmasitdageepkseneesrt 422  Rhodopirellul...
NP_867073     610 --------------------dprrkatiardlgargiifvagptsqvkrdvirfdanasqaqvslaaisisnevasklvr 669  Rhodopirellul...
CAJ70990      575 ---------------------ykamiarehgakallvvtgpnspdagellpltfdnasadsgivaasisgdaakalfsfi 633  Candidatus Ku...
YP_446822         --------------------------------------------------------------------------------      Salinibacter ...
WP_002645582  253 daveelitatdnwskanekkqeeaerelkkalhdiqqarqvlkdakfdklmefgyagsgdgrsipiahisidacnqlfka 332  Gimesia maris
Feature 1                                                                               #         
ABB86529       94 -------------------------------sdsiqensiTGKNVIGFIDNk---------SINTIVVGAHYDHLGFGG- 132  uncultured Ba...
NP_866403     423 lfanglaaveaaidsdykprtidspglrgrlrvgltnataTSPNVIGVLEGkg------glADETVVIGAHYDHVGMGG- 495  Rhodopirellul...
NP_867073     670 agghdlkelqshlddgkmamgipmsgitveasieinrrtgTGRNVIARLPVdseanstddvQFPVVMVGAHIDHLGRGGg 749  Rhodopirellul...
CAJ70990      634 gkdiatvqseldiekseaqtafampgikatistavkrektSDHNVIGYLPPadg-----kdDCEYIVVGAHLDHIGYGG- 707  Candidatus Ku...
YP_446822      60 ----------------------------------ghgtprTGRNVVAHLDRg---------AGRTVVIGAHYDGLGYGG- 95   Salinibacter ...
WP_002645582  333 agkpllkeleknidqdlkpesfaltdwkakgeisveqirtEIKNVIGVLEGkg------phADETIVIGAHYDHVGYGG- 405  Gimesia maris
Feature 1                           #                                     ##                      
ABB86529      133 EGSLYRsd-sLKIHNGADDNASGVSLMLDLAAKLKDn-------nNNNYMFIAFSGEELGLLGSNFFVKNPtid------ 198  uncultured Ba...
NP_866403     496 IGSLAPg--tIEIHNGADDNASGTATMLAVAERVVSeltd--aseHRRIVFIAFTGEERGLLGSKFYCSQPrfp------ 565  Rhodopirellul...
NP_867073     750 SNSLARsdeeNQVHVGADDNASGVAAMLEIAQYLVDqrnsgrlkmKRDLMVAAWSGEELGLFGSQAFVDDFsklypaapi 829  Rhodopirellul...
CAJ70990      708 TESLARkgeeGMIHNGADDNASGVSVVLELAAALAEtykkkpqdkRRGLVFAFWSGEEMGLLGSSHFIKNPafp------ 781  Candidatus Ku...
YP_446822      96 PGSRSPg--dSLIHNGADDNASGVAALLEMAHQLKNsd-----alSSNVLFVAFSGEELGLYGSKHFVDAMpmp------ 162  Salinibacter ...
WP_002645582  406 EGSLAPg--sTDVHNGADDNASGTVALIELARKLAArkt----plPRRIVFIAFTGEERGLIGSAHYVKNPvfd------ 473  Gimesia maris
Feature 1                                          #                                              
ABB86529      199 -----------------------ikSINYMINMDMVGRLNNenTLAVYGLGTSPIFKQTIKSNNK-------NFKIIENE 248  uncultured Ba...
NP_866403     566 -----------------------msKTVTMLNMDMVGRLRDn-ELTVYGTGTSDGFESLIQGLNSdmeqtsrPFKLNLVS 621  Rhodopirellul...
NP_867073     830 qepseddiaiahahgmtpdaaslgdAVAVYLNLDMVGRLRD--KLIVQGIGSSPGFEGEVQRRNVp-----vGVALQLDR 902  Rhodopirellul...
CAJ70990      782 -----------------------lkNTIAYINFDMVGRLRDn-KLIIQGAGSSKSWPQLFEKRNIm-----sGFNLILQH 832  Candidatus Ku...
YP_446822     163 -----------------------pdQVRYMINLDMVGRLGDsrRLVVSGTGTSPAWAPALDAAAEa-----tNITLAEDP 214  Salinibacter ...
WP_002645582  474 -----------------------ikNTVAMLNMDMVGRLTDd-KLTVFGTGTAPRWEKLVKETAKt-----yDLKLSLKP 524  Gimesia maris
Feature 1                                       #                            
ABB86529      249 SG-VGPSDHTSFYLNDIPVLHFFTGQHSDYHKPSDDSELLNYEGINLISDFIYSIISDL 306  uncultured Bacteroidetes bacterium...
NP_866403     622 TG-YGPSDHASFYQAGVPVLFFFTGLHSDYHRPSDDFEKLNLDGMTRITDIVSQAANRV 679  Rhodopirellula baltica SH 1
NP_867073     903 TStRLPTDASAFVARKVPILSGFTGAHEDYHTPRDTPDKLNYDGNADIANLFGLLTRGF 961  Rhodopirellula baltica SH 1
CAJ70990      833 DP-YLPTDATPFYQEGVPIMNFFTGSHDDYNRPTDDTVTLNYEGMAKIAQFAKNIISDL 890  Candidatus Kuenenia stuttgartiensis
YP_446822     215 SG-LGASDHTSFYLDDIPAVHLFTGAHDHYHTPGDDSHRIDYDGLHDVATFAVRLVEAL 272  Salinibacter ruber DSM 13855
WP_002645582  525 EG-FGPSDHSSFYGKQIPVLHLFTGTHSDYHRPSDDWDKINIPGMQRVVGFLEEIAIAT 582  Gimesia maris

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