2W4M,2HOQ,3QNM,4KNW,2GFH


Conserved Protein Domain Family
HAD_Neu5Ac-Pase_like

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cd04305: HAD_Neu5Ac-Pase_like 
Click on image for an interactive view with Cn3D
human N-acetylneuraminate-9-phosphate phosphatase, Escherichia coli house-cleaning phosphatase YjjG, and related phosphatases
N-acetylneuraminate-9- phosphatase (Neu5Ac-9-Pase; E.C. 3.1.3.29) catalyzes the dephosphorylation of N-acylneuraminate 9-phosphate during the synthesis of N-acetylneuraminate; Escherichia coli nucleotide phosphatase YjjG has a broad pyrimidine nucleotide activity spectrum and functions as an in vivo house-cleaning phosphatase for noncanonical pyrimidine nucleotides. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Statistics
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PSSM-Id: 319800
Aligned: 31 rows
Threshold Bit Score: 130.74
Created: 13-Apr-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:based on human N-acetylneuraminate-9-phosphate phosphatase (HDHD4) and other haloacid dehalogenase (HAD) superfamily members with structure
  • Structure:4KNW: human N-acetylneuraminate-9-phosphate phosphatase (HDHD4) binds Mg2+ ion and the phosphate mimetic vanadate ion in the active site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #####                                                                       
2W4M_A     30 AVFFDLDNTLIdtagasrrgmlevikllqskyhykeeaeiicdkvqvklskecfhpyn---------------------- 87  human
2HOQ_A      4 VIFFDLDDTLVdtsklaeiarknaienmirhglpvdfetayselielikeyg---------------------------- 55  Pyrococcus horikos...
4KNW_B     10 AVFFDLDNTLIdtagasrrgmlevikllqskyhykeeaeiicdkvqvklskecfhpyn---------------------- 67  human
2GFH_A     20 AVFFDLDNTLIdtagasrrgmlevikllqskyhykeeaeiicdkvqvklskecfhpys---------------------- 77  house mouse
AAH68687    8 AVFFDLDNTLIdtsgagkkaieevvkvlteenqykedeahiicnkfqaklgcetldss---------------------- 65  African clawed frog
O26311      4 AVFFDIDDTLYdtsgfaklarkaalnvmidaglpltqeeaykllreiisekg---------------------------- 55  Methanothermobacte...
CAF89807    4 AIIFDLDNTLIdtrragevaiqktgdllktalalddatiavicdkfkqkllgercdpsa--------------------- 62  Tetraodon nigrovir...
Q8TWR2      4 AVLFDVDDTLYpssklaeearrnairamieagletdlseeelyrelqevvkey--------------------------- 56  Methanopyrus kandl...
Q58832      4 GILFDLDDTLYnssefveiarreavksmidaglnidfeeamnilnkiikdkg---------------------------- 55  Methanocaldococcus...
P94512      3 AVFFDLDDTLLwdeksvrttfaetclqaekkyglapeefeaavreaarelymsyetypytvmiginpfeglwsnfsepis 82  Bacillus subtilis ...
Feature 1                                                                            ##       
2W4M_A     88 -----tcitdlrtshweeaiqetkggaanrklaeecyflwkstrlqhmtlaEDVKAMLTELrk-eVRLLLLTNGdrQTQR 161 human
2HOQ_A     56 ----------snfpyhfdyllrrldlpynpkwisagviayhntkfaylrevPGARKVLIRLkelgYELGIITDGnpVKQW 125 Pyrococcus horikos...
4KNW_B     68 -----tcitdlrtshweeaiqetkggaanrklaeecyflwkstrlqhmtlaEDVKAMLTELrk-eVRLLLLTNGdrQTQR 141 human
2GFH_A     78 -----tcitdvrtshweeaiqetkggadnrklaeecyflwkstrlqhmilaDDVKAMLTELrk-eVRLLLLTNGdrQTQR 151 house mouse
AAH68687   66 -----kmtiddlrvrhweeamlevrqgdhkevasdcytmwktrrlqlltmsQSTKDMLCELrk-sTRLVLLTNGvrQVQR 139 African clawed frog
O26311     56 ----------snydrhfnvltktvfgeekpllialgmityhnvkfallrpfPNTTSTLIDLkskgYRLGVISNGitIKQW 125 Methanothermobacte...
CAF89807   63 ----crsveevrvahwqesiqevrgsssasalasqcyrlwkstrlevlslpPERSELLKQLra-sYKLLLLTNGlaEVQR 137 Tetraodon nigrovir...
Q8TWR2     57 ---------gsnhprhfdlllrrigadpepklvaaavvayhdtkfaylkpyPDVIPTLMQLremgFKLGAVTSGlaVKQW 127 Methanopyrus kandl...
Q58832     56 ----------snygkhfddlvkavlgkydpkiittgiityhnvkvallrpyPHTIKTLMELkamgLKLGVITDGltIKQW 125 Methanocaldococcus...
P94512     83 egfqklnkivpeyrrnawtnglkalgiddpaygeylgeffaaerrkrpfvyDETFAVLDQLkg-kYELLLLTNGdpSLQK 161 Bacillus subtilis ...
Feature 1                              #                       ##   ##                
2W4M_A    162 EKIEACACqs-yFDAVVVGGEQREEKPAPSIFYYCCNLLgvqpgdCVMVGDTLETDIQGGLNAGlkATVWIN 232 human
2HOQ_A    126 EKILRLELdd-fFEHVIISDFEGVKKPHPKIFKKALKAFnvkpeeALMVGDRLYSDIYGAKRVGm-KTVWFR 195 Pyrococcus horikoshii OT3
4KNW_B    142 EKIEACACqs-yFDAVVVGGEQREEKPAPSIFYYCCNLLgvqpgdCVMVGDTLETDIQGGLNAGlkATVWIN 212 human
2GFH_A    152 EKIEACACqs-yFDAIVIGGEQKEEKPAPSIFYHCCDLLgvqpgdCVMVGDTLETDIQGGLNAGlkATVWIN 222 house mouse
AAH68687  140 EKIESCGAqq-fFDAVVVGGEHAEEKPAPSIFYHCCDLIgvlpgdCVMVGDNLDTDIQGGLNAGlkATIWIN 210 African clawed frog
O26311    126 EKLIRLGIhh-fFDEVVTSDEVGFEKPNIRIFEEALRRMgckperSVMVGNKFNEDILGATNAGm-SAILVN 195 Methanothermobacter therma...
CAF89807  138 EKVEAVGCee-fFDAVVIGGEHAEQKPSPSIFTWCFDALgvraedCVVVGDDLDADIQGGFNAGvrATVWIS 208 Tetraodon nigroviridis
Q8TWR2    128 EKLIRLGIhh-fFHEVVISEEIGVEKPNPKIFIEAARRLgvkpeeAVYVGDRLDKDIRGANRAGm-VTVRIR 197 Methanopyrus kandleri AV19
Q58832    126 EKLIRLGIhp-fFDDVITSEEFGLGKPHLEFFKYGLKRMglkaeeTVYVGDRVDKDIKPAKELGm-ITVRIL 195 Methanocaldococcus jannasc...
P94512    162 EKLAGVPElapyFNEIVISGAFGKGKPDVSIFEHCLKLMniekddAIMVGDNLNTDILGASRAGi-KTVWIN 232 Bacillus subtilis subsp. s...

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