1J2Q,1IRU,1IRU,1IRU,1IRU,1IRU,1IRU,1Z7Q,1PMA,1YAU


Conserved Protein Domain Family
proteasome_beta

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cd01912: proteasome_beta 
Click on image for an interactive view with Cn3D
proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Statistics
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PSSM-Id: 238893
Aligned: 244 rows
Threshold Bit Score: 125.634
Created: 7-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitebeta subunit
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1     #               # #             #                                               
1J2Q_N      1 TTTVGLVCKDGVVMATEKRATMGnfiaskaAKKIYQIAdRMAMTTAGSVGDAQFLARIIKIEANLYEIRRer-------- 72  Archaeoglobus fulg...
1IRU_1     10 GTILAIAGEDFAIVASDTRLSEGfsihtrdSPKCYKLTdKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNnk-------- 81  cattle
Q9USQ9     44 SSVLALKFADGVMIAADNLASYGslarfydVERLTKVGdNTIVGAGGDISDYQQIQRLLEKLEIKEGNYGdgy------- 116 fission yeast
XP_504688  45 SSVIGIKFDKGVIVAADTLASYGslarfdnMDRLTQVGdSTIVGIGGDVSDMQYVQRLLEELEIEENYDNsgd------- 117 Yarrowia lipolytic...
AAW46373   54 TSVLGIKFDKGVMIAADNLGSYGslarfrdIQRLHPLGkHTLLGVAGDMSDYQWLKRELDGLLREESALSltds-----h 128 Cryptococcus neofo...
XP_762007  49 TSVLGIKYKDGIMLATDTLASYGslarfmdITRISQFGqNTLIGASGDMSDWQYVQHMLNKLITSEDVAAdgh------- 121 Ustilago maydis 521
XP_720667  51 TSVIASKFKNGVIMAADHVGSYGsllrfnnIERLIKVGkETVVGISGDISDLQYIVRLLDELEIDEEVYDndgg------ 124 Candida albicans S...
XP_327651  41 TSVIAMKYKDGVVMAADNLASYGslarfpdVKRLRVFLdSSVVGFSGDVSDMQFLDRHLTDLSIDEAYEDpsctaapngk 120 Neurospora crassa ...
XP_652586  20 ASVLGIKYEGGVLIAADTLGSYGsmalfkdLERVIKLGkYTIIAGSGEYSDFIELNETLQKKVNGDECCEgke------- 92  Entamoeba histolyt...
NP_492354  18 TSVIALQYKTGVVVLTDRVVSYGkmaryknVSRQYKVNdNVLIAFGGDHADFHWLQNVIERQVLLWKRFDqd-------- 89  Caenorhabditis ele...
Feature 1                                                                          #          
1J2Q_N     73 -kpTVRAIATLTSNLLNSYry--fpYLVQLLIGGIDs--------eGKSIYSIDPIGGAIEEkdIVATGSGSLTAYGVLE 141 Archaeoglobus fulg...
1IRU_1     82 -amTTGAIAAMLSTILYSRrf--fpYYVYNIIGGLDee-------gKGAVYSFDPVGSYQRDs-FKAGGSASAMLQPLLD 150 cattle
Q9USQ9    117 -alQPSYIHEYLSKVLYARrnkldpYWNQLIVAGVDge------nkEPYVAFADLRGTTYSAp-AIATGFAMHLALPMLR 188 fission yeast
XP_504688 118 qslHSENIFNYLSKVYYNRrskmdpLWNAVLVGGVDsk-------dEPFLSHVDLLGVTFSSp-ALATGFGAYLALPLLR 189 Yarrowia lipolytic...
AAW46373  129 pslSPSNIYTLLSNLFYARrskvdpIWNAVLVGGWDdt------kkESFLAYVDLLGTTYSAp-TLATGFGAHLAQPLLR 201 Cryptococcus neofo...
XP_762007 122 -nlTPTQIYAYLARVMYQRrskinpLWNSFVLGGVDpk------dgTPFLGYVDLLGTTFTSs-TIATGFGLHLAQPLLR 193 Ustilago maydis 521
XP_720667 125 eylRAPNVHEYLSRVLYNRrskmnpLWNAIIVGGFNkd-------rTPFLKYVDLLGVTYHAs-TMATGFGSHLAIPLLR 196 Candida albicans S...
XP_327651 121 ghlNAANLHKYLQKLLYKRrndfdpLWNQLLIAGFDgh-------sKPYLASVDLRGTSFTSp-SLATGFGSALAQPIMR 192 Neurospora crassa ...
XP_652586  93 ngyKPSELYSYAQRILYKHrcdqkpLFVTLIVGGVKk--------dEIFLGQTDMYGTSFTEn-YVASGIGAHMAMPLLR 163 Entamoeba histolyt...
NP_492354  90 --iGPKALHGYLTSLLYAKrckmnpVWNTLVVAGVEeeeknnketsTPFIGVITQKGCAYQVk-HIATGLGAFLLNQAVE 166 Caenorhabditis ele...
Feature 1                                        #  ##                  
1J2Q_N    142 DRFTPe---------IGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEd-eFYQYS 189 Archaeoglobus fulgidus
1IRU_1    151 NQVGFknmqnvehvpLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKe-gIREET 207 cattle
Q9USQ9    189 KATDDdrw-----ktLSKESARATIDECMRVLFYRDARSLNKFSVATITPe-gIEFQT 240 fission yeast
XP_504688 190 QLVPYpds----yknVTEADARAMVEKCMKVLFYRDARSIDKYDVATITKg-nVKIEK 242 Yarrowia lipolytica CLIB122
AAW46373  202 EAYEAkagidgkgplLTQEEAEKLIDDCMKVLFYRDARSINKYQVATITDe-gVKISD 258 Cryptococcus neoformans var. neoformans ...
XP_762007 194 KMVEGre------dtLTEAEAKEILENCMKVLFYRDARSLNRFRIAKVTRd-gCEISE 244 Ustilago maydis 521
XP_720667 197 NLIPEdkd----yvkVDEQQVSKAIEDSMRVLFYRDARSGENYSVVIIKId-eNTGEL 249 Candida albicans SC5314
XP_327651 193 RYAETeed----aakLTREQAVEVIKECMKVLYYRDARSLDRYSIAVVTKd-gVELKE 245 Neurospora crassa OR74A
XP_652586 164 KEWKDh---------MSREEAEHLIERCMKILYLNHCWAGNQYLLGVVDSe-gSDIIG 211 Entamoeba histolytica HM-1:IMSS
NP_492354 167 DEWRKkg------edLSREEAEAVLRKSLELTLYHDCVADNEFEIGRVDAtegVVLGK 218 Caenorhabditis elegans

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