1IRU,1IRU,1IRU,1IRU,1IRU,1IRU,1IRU,1J2P,1YA7


Conserved Protein Domain Family
proteasome_alpha

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cd01911: proteasome_alpha 
Click on image for an interactive view with Cn3D
proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Statistics
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PSSM-Id: 238892
Aligned: 171 rows
Threshold Bit Score: 216.925
Created: 7-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitealpha subunit
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                 #               # #            #                    
1IRU_A      9 FDRHITiFSPEGRLYQVEYAFKAINQGgLTSVAVRGKDCAVIVTQKKVPDKlldsstvTHLFKITENIGCVMTGMTADSR 88  cow
P52428      6 YDTDVTtWSPAGRLFQVEYAMEAVKQG-SACVGLRSRTHAVLAAANKAASElss--hqRKVFRVADHAGVALAGLTADGR 82  rice
AAC23597    6 YDTDVVtWSPQGRVFQIEYAMEAVKQG-TAVVGARNDEIVVLACIKRSTSRlag--yqKKLYKIDNHIGVAVSGITADAK 82  Cryptosporidium pa...
AAC32062    6 YDTDVTtWSPTGRLFQVEYAMEAVKQG-SAAIGLRSRSHVVLACVNKAQSElss--hqRKIFKVDDHIGVAIAGLTADGR 82  thale cress
O96788      6 YDTDTTtWSPTGRLFQVEYANEAVNNG-SAAVGVKGADYVVLTALKRNPVSgls-syqEKAFKLDEHVGMAISGLVADGR 83  Trypanosoma brucei...
P92188      6 YDTNTTtWSPTGRLFQVEYANEAVNNG-SAAVGAKNKDFVVLTALKRSPVAqfs-syqEKVFKLDDHVGMAIAGLVADGR 83  Trypanosoma cruzi
NP_702605   6 YDTDNIiYSPEGRLYQVEYASEAIKQG-TCAVAIKSKDYVVVSGLKKCISKlsf--pqEKIFKIDDYIGISMSGITSDAK 82  Plasmodium falcipa...
XP_653086   6 YDSDNItWSPQGRLFQIEYATEAVKQG-SAVVGVKSKTHAVVATFNRQTDElga--yqKKIFEIDDHIGVAISGFCADAR 82  Entamoeba histolyt...
XP_765495   6 YDTDCItWSPQGRLFQVEYAMESVKQG-TCCVGIKSNTHLVLCALKRKISKlaq--vqDKLYKVGEYIGVAMSGITSDAK 82  Theileria parva st...
EAR89504    8 YDTDCStWSTNGKLLQVDYATKAIDQG-SITIGLRSQKFAVLVAQKRSNSKlsg--yqEKIFQVDDKIGMGVAGITADAR 84  Tetrahymena thermo...
Feature 1                                                                                     
1IRU_A     89 SQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQnaEMRPLGCCMILIGIDeeqgPQVYKCDPAGYYCGFkATAA 168 cow
P52428     83 VLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQrsWKRPYGVGLLVAGLDes-gAHLYYNCPSGNYFEYqAFAI 161 rice
AAC23597   83 VICNYLRSECLNYSFTYDSPIPLNTLVNRLVLKSQVNTQeyGRRPFGVGLLLAGFDes-gPHLFETCPSGNCFEYySIAI 161 Cryptosporidium pa...
AAC32062   83 VLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQrsWKRPYGVGLLVGGLDes-gAHLYYNCPSGNYFEYqAFAI 161 thale cress
O96788     84 ALSRFLRTECMNYRYMHDSDAPLVMLADIVGAKHQRHIQfaGKRPFGVGLLIAGYDrq-gPRLYQTVPSGDVFDFkATAM 162 Trypanosoma brucei...
P92188     84 MLARFVRTECMNYRYMHDSDNPLPLIAEIVGEKYQRHIQfaGKRPFGVGLLIAGYDst-gPHLYHTVPSGDVFDFkATAM 162 Trypanosoma cruzi
NP_702605  83 VLTKFMQNECLSHKFLYNENINIESLVRSVADKYQKNTQksSKRAFGVGLMIAAYHn--ePCIFETRPNGSYFEYdALSF 160 Plasmodium falcipa...
XP_653086  83 VITSQMRSECIDYSYVYGTPHPVEKLVKHVSDNAQVNTQkyGLRPYGVGLLVIGYDt--kPRLFETSPSGLYYSYkAQAI 160 Entamoeba histolyt...
XP_765495  83 MIISYMRNECLSNRFLYGCDITASQLVSLVSEKSQANTQvsSKRPFGVGLLVAGYDettgLHLFETCPSGNVVEFnATAF 162 Theileria parva st...
EAR89504   85 VICKYMRTECLNHKYVYGSQHPAQRLVIKISEKSQHKTQtyGKRPYGVGTLIIAQEsd-gPKLFQTLPSGDFYEFyGQSI 163 Tetrahymena thermo...
Feature 1      #                                                      
1IRU_A    169 GVKQTESTSFLEKKVkkkfd-wtfeqTVETAITCLSTVLsidf---kpsEIEVGVV 220 cow
P52428    162 GSRSQAAKTFLERRFegynd-ytpeqLIKDALSAIKETLqgek--ltssNCTVAIV 214 rice
AAC23597  162 GSRSQASKTYLEKHFkefan-cskdqLILHTLRALRSSLsseqe-mnqeNVDVAIL 215 Cryptosporidium parvum
AAC32062  162 GSRSQAAKTYLERRFesfgd-ssredLIKDAILAVRETLqget--lkssLCTVAIL 214 thale cress
O96788    163 GLRSQAARTYLERHFrgfpa-cdldeLVMHALRALGAATsggve-lnikNTTIAIV 216 Trypanosoma brucei rhodesiense
P92188    163 GLRSQAARTYLEKHFesfpd-cgldeLIMHALKALAAATsggae-lnikNTTIAIV 216 Trypanosoma cruzi
NP_702605 161 GARSHASKTYLEKNLhlfee-csleeLILHCLKALKCSLssese-ltisNTALAVV 214 Plasmodium falciparum 3D7
XP_653086 161 GARSQSCRTYLEKHFesfke-ldeeqLIKQAILALRESLtttndklsvlNCSVAIV 215 Entamoeba histolytica HM-1:IMSS
XP_765495 163 GARCQSAKTYLERKIvnfse-sdlngLIYHAIKALKTTIpndge-fdvdVISVGVV 216 Theileria parva strain Muguga
EAR89504  164 GSRSQAAKTYLENNLelfkdcndlntLILHGLSALKKANqgeee-llpqSVDIAFV 218 Tetrahymena thermophila SB210

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