Conserved Protein Domain Family
ClC_euk

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cd01036: ClC_euk 
Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Statistics
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PSSM-Id: 238507
Aligned: 11 rows
Threshold Bit Score: 433.309
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative Cl-putative pore
Feature 1:putative Cl- selectivity filter
Evidence:
  • Comment:Based on sequence similarity to other members of the family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                      
P51788      98 GLLMALVSWVMDYAIAACLQAQqwmsrgl---------------------------------------ntsillqYLAWV 138  human
CAA96065    84 GIGTGLAAVFINLSVENFAGWKfaltfaii--------------------------------------qksyfagFIVYL 125  thale cress
CAC22644   152 ALSVGVVATVVSYAVDILEKYRaevlyrimtsq--------------------------------rhrsvgnlqgLLYTV 199  Leishmania major
P51792      78 GLASGALAGLIDIAADWMTDLKegiclsalwynheqccwgsnettfeerdkcpqwktwaeliigqaegpgsyimnYIMYI 157  Norway rat
NP_000076   57 GVLMALVSCAMDLAVESVVRAHqwlyrei---------------------------------------gdshllrYLSWT 97   human
CAJ08868   171 GGDDEKAAVVLRTLSWSALLHG-----------------------------------------------------GVLYT 197  Leishmania major
XP_827183  141 AVTVGVVAIIVSYSVELIQDHRehllvrlmnk----------------------------------ggfgwctlaLFIDL 186  Trypanosoma bruc...
XP_829726  159 AQTVGGGAGFPMRSTPSGVSWAvag------------------------------------------------kcYIIYI 190  Trypanosoma bruc...
XP_823375  128 TAMFEGVGVGLYGISPRSYMKG-----------------------------------------------------YLMWV 154  Trypanosoma bruc...
XP_816207  151 AALFEGVGVGLYGIEPRSLKKG-----------------------------------------------------YLMWI 177  Trypanosoma cruz...
CAJ06203   108 VWAMLRGYSVGLYGIASPRWYWs---------------------------------------------------gYLLWV 136  Leishmania major
Feature 1                            #####                                       #####         
P51788     139 TYPVVLITFSAGFTqiLAPQAVGSGIPEMKTILRGVvlkeYLTLKTFIAKVIGLTCALGSGm--pLGKEGPFVHIASMCA 216  human
CAA96065   126 LINLVLVFSSAYIItqFAPAAAGSGIPEIKGYLNGIdipgTLLFRTLIGKIFGSIGSVGGGl--aLGKEGPLVHTGACIA 203  thale cress
CAC22644   200 VGSVVLVAIAAGVVvyFEPAASGGGIPDVMAYLNGVhlrkAMNLRTFIAKAISCICAVAGGl--pVGLEAPLIHLGAITG 277  Leishmania major
P51792     158 FWALSFAFLAVSLVkvFAPYACGSGIPEIKTILSGFiirgYLGKWTLMIKTITLVLAVASGl--sLGKEGPLVHVACCCG 235  Norway rat
NP_000076   98 VYPVALVSFSSGFSqsITPSSGGSGIPEVKTMLAGVvledYLDIKNFGAKVVGLSCTLACGstlfLGKVGPFVHLSVMMA 177  human
CAJ08868   198 MWGVLMALLSSLCCl-VMPSAAGSGIPDVMAYLNGVmfprIFNIRNLVVKTLSCILAVSAGl--pVGTEGPMIHMGSLIG 274  Leishmania major
XP_827183  187 CTSIWFVMIAAGVVvyFEPGAAGGGIPDVMAYLNGVhvpkVMTLRTFVVKSISCVCGVAGGl--pVGLEAPLIHLGAIVG 264  Trypanosoma bruc...
XP_829726  191 LWCAGFALLSSLCCl-VMPTAAGSGVPEVMAYLNGVmfprVFNIRNLIVKTLSCIFVVSAGv--pVGAEGPIIHIGSLIG 267  Trypanosoma bruc...
XP_823375  155 SFSFVTSLISSVICi-CVPGSVGAGMPEVMAYLNGVdypmLGSFGVLLAKIASVVFSVASGv--cTGHCGTLMLTGAMVG 231  Trypanosoma bruc...
XP_816207  178 SFSLVLSVISSLICl-LVPESIGSGLPEVMAYLNGVhypmLGSFRVLLAKVSFIIFSVASGa--cTGHFGTIILTGAMLG 254  Trypanosoma cruz...
CAJ06203   137 AFAVCTSAIASGMCy-LVPQSVGSGIPEVRAFLNGVsypmMRSTRVLVAKTVAVVFTVASGv--cTDHYSHLMLAGAMLG 213  Leishmania major
Feature 1                                                                                      
P51788     217 ALLSKFLSLfgg--------iyeNESRNTEMLAAACAVGVGCCFAAPIGGVLFSIEVTSTFFAVRNYWRGFFAATFSAFI 288  human
CAA96065   204 SLLGQGGSTkyhlnsr-wpqlfkSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVV 282  thale cress
CAC22644   278 AGVTQGRSRtlgfqts-mfqafrNNKDRRDFITAGAACGVSVAFGAPIGGLLFVMEEVSSFWDQSSNGQIFLATMLCFTF 356  Leishmania major
P51792     236 NIFSYLFPKys-----------tNEAKKREVLSAASAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFAALVAAFV 304  Norway rat
NP_000076  178 AYLGRVRTTtig--------epeNKSKQNEMLVAAAAVGVATVFGAPFSGVLFSIEVMSSHFSVWDYWRGFFAATCGAFM 249  human
CAJ08868   275 AGLPTGRSRslgcsatsvfdlfrNPRDQRDFISAGAACGLTSAFSSPLGGMLFVLEEMATHFSVRLAWLVFLSCLSCMWI 354  Leishmania major
XP_827183  265 AGVTQGRSRalrcqts-lfqafrNNKDRRDFITAGAACGVSAAFGAPIGGLLFVMEEVSSFWDHSASGQIFLATMVCFSI 343  Trypanosoma bruc...
XP_829726  268 AGLPTGRSRtlncgatsllstfrNPRDMRSFISAGAACGVTSAFSAPIGGLLFVMEEVATFFSVRLACMVFVSCLACMCV 347  Trypanosoma bruc...
XP_823375  232 AQTLQRRRWiqiehvn-iiecfrNPRDRRTIVVIGAAAGIASAFNVSIGGLMVVVELISTTIPVRFALYVFAASLVSSLF 310  Trypanosoma bruc...
XP_816207  255 AQALQRRRYfrcdsvh-iiecfrNPRDRRVITVIAAAAGVASAFGVSIGGLMVVVELISTILPVRFAIYVFAASLVSSLT 333  Trypanosoma cruz...
CAJ06203   214 SQLLQRRHGircyhvh-fvdyfrNPRDHRTVLVIGAAAGIAAAFCVSVGGLLVILELVSAVFPVRFALYVFAACLLSTLS 292  Leishmania major
Feature 1                                                                                      
P51788     289 FRVlavwnrdeetit----------------alfktrfrldfpFDLQELPAFAVIGIASGFGGALFVYLNRKIVQVMRkq 352  human
CAA96065   283 VRTamgwcksgicghfgg-----------ggfiiwdvsdgqddYYFKELLPMAVIGVIGGLLGALFNQLTLYMTSWRRns 351  thale cress
CAC22644   357 STIinsivegrrllgwvs-----------naaavlfevnitipLNLVSIIPSLFLGIIMGSLAAFFTKTNLILIKWRRrv 425  Leishmania major
P51792     305 LRSinpfgnsrlv---------------------lfyveyhtpWYLFELFPFILLGVFGGLWGAFFIRANIAWCRRRKst 363  Norway rat
NP_000076  250 FRLlavfnseqetit----------------slyktsfrvdvpFDLPEIFFFVVLGGLCGILGSAYLFCQRIFFGFIRnn 313  human
CAJ08868   355 IQAcnsflsgwhlvdrsamalgdlreasiamfyidtvrentvsLYTYTFIPTVMVAVLSGLLAVAYTVSSIRFSRWRSrc 434  Leishmania major
XP_827183  344 ISIfrsviedqrllgwvs-----------navsvlfevnlsipLNVYSIAPSFFLGIVCGLFAALFTKVNIVLIKYRRrc 412  Trypanosoma bruc...
XP_829726  348 IQIvnsymsgwhllaqspmthgeflpsaiamfivnnvpgnhvpLNVYTFIPTVVGSLALGLLAVLYTVSSVRFLRWRRer 427  Trypanosoma bruc...
XP_823375  311 IQVyfshflyfagrdrtgyssgeliselvqvfastipfeqivrMHILYFIPTVVIGFICGALSGVYVRLSWFALVVRRhl 390  Trypanosoma bruc...
XP_816207  334 LQIyfsffsyfslrdrhsyphgelisemvqffvscvsfedlvrMHIFYFIPTTLIGLFCGVLASVFVRLSSFALGLRRwl 413  Trypanosoma cruz...
CAJ06203   293 TQMywsycmnfdspyrlhggll---lrevvlfrshlpfgqhaaMNLMAYIPAFVIGLCSGACAVGFVRLSWVALYCRRll 369  Leishmania major
Feature 1                                                                                      
P51788     353 ktinrflmrkRLLFPALVTLLISTLTFppgfgqfmagqlsqketlvtlfdnrt--------------------------- 405  human
CAA96065   352 lhk--kgnrvKIIEACIISCITSAISFglpllrkcspcpesvpdsgiecprppgmygnyvnff----------------- 412  thale cress
CAC22644   426 lrp---cqfrRLLEPVVIGAVFSTCMYvlslvspcaelhdigtvnetvqqwgteggwrlfnnt----------------- 485  Leishmania major
P51792     364 kf-----gkyPVLEVIIVAAITAVIAFpnpytrlntselikelftdcgplesssl------------------------- 413  Norway rat
NP_000076  314 rfsskllatsKPVYSALATLVLASITYppsagrflasrlsmkqhldslfdnhswal------------------------ 369  human
CAJ08868   435 lfp---talyRVLEPCVFASLFSTACYvmplftpcvptpphvrekkealnvelftafcaq-------------------- 491  Leishmania major
XP_827183  413 mrq---ssirRFLEPVVAITLYSLLSYffamlsgcapfqdmedrgdvlvwgtenttslftat------------------ 471  Trypanosoma bruc...
XP_829726  428 lfp---ntflRVLEPCLFSLAYNTVCYvlplafgcieippyvkdhkaemkvelftefcad-------------------- 484  Trypanosoma bruc...
XP_823375  391 eqrf-kvrafRALLPVAFTVAYVSLHYwmvvafgsagwsppssalnptdnttagglttlrwgnssavsphfvdtqsgpcv 469  Trypanosoma bruc...
XP_816207  414 eqrl-etkavRYVLPVLFTGIYVTIHFwvaaavgsggwsppapspsepprigsdsirlpmlqqtmsnesnpaglhgamgg 492  Trypanosoma cruz...
CAJ06203   370 evrl-rtkviRYVLPILFTLVYVSVHYwvavafsaesgpgdtmpsavgadsnaqrsgsadplasssssdgadvgppavcr 448  Leishmania major
Feature 1                                                                                      
P51788     406 -------------------------------------------------------------------wvrqglveelepp 418  human
CAA96065   413 ----------------------------------------------------------cktdneyndlatiffntqddai 434  thale cress
CAC22644   486 ----------------------------------------------------------ctkpktysplgtlnmasgknti 507  Leishmania major
P51792     414 -----------------------------------------------------------------cdyrndmnaskivdd 428  Norway rat
NP_000076  370 ----------------------------------------------------------------mtqnssppwpeeldpq 385  human
CAJ08868   492 ------------------------------------------------------------petthhplatltmtspynll 511  Leishmania major
XP_827183  472 ----------------------------------------------------------csenntfsplatlvlgserdti 493  Trypanosoma bruc...
XP_829726  485 ------------------------------------------------------------rentfnplatlalmgpynsi 504  Trypanosoma bruc...
XP_823375  470 avpqtlsdsrdv-----------------svisfygangffcaapnntvipvtatvheqqvwivlhsyaslafanadsal 532  Trypanosoma bruc...
XP_816207  493 pcvavpstllttln-------------vtsisyygangffcsaptavedqvheerwgmkptlsvlhayaslafanadsav 559  Trypanosoma cruz...
CAJ06203   449 pvpytvrsgrnvttigfygmngflcpagsyrvvdavdiynaaehsnrvssvtktlprrqqtvrvvdayaslafsyadstl 528  Leishmania major
Feature 1                                            #####                                     
P51788     419 stsqawnppranvFLTLVIFILMKFWMSALATTiPVPCGAFMPVFVIGAAFGRLVGESmaawfpdgih-------tdsst 491  human
CAA96065   435 rnlfsaktmrefsAQSLLTFLAMFYTLAVVTFGtAVPAGQFVPGIMIGSTYGRLVGMFvvrfyk---------------k 499  thale cress
CAC22644   508 rhlfsrqtagefpVMTLIVYFLIYFASACMASGtSVSGGLVVPSLVLGAVFGRLFGLLmfhigvakipdv--prgyasad 585  Leishmania major
P51792     429 ipdrpagvgvysaIWQLCLALIFKIIMTVFTFGiKVPSGLFIPSMAIGAIAGRIVGIAveqlayyhhdwfifkewcevga 508  Norway rat
NP_000076  386 hlwwewyhprftiFGTLAFFLVMKFWMLILATTiPMPAGYFMPIFVYGAAIGRLFGETlsfifpegiv-------aggit 458  human
CAJ08868   512 rllfsrrsvglfpAWSLFLHLAIYVVGSSYAGGmFISCGTVIPSLLIGAVEGRLIGVLfqrp------------------ 573  Leishmania major
XP_827183  494 rhlfsrqtiwqyhPVQLLVLLLLYTIFACWSNGmAISGGLVVPSLVIGAALGRLFGLFvcfvgmgnigve---rgymasl 570  Trypanosoma bruc...
XP_829726  505 rvlfsrhttglipWYACLLQLMLYTFSSSYAGGmFVSCGTVIPSLFIGAMGGRLVGTLfnne------------------ 566  Trypanosoma bruc...
XP_823375  533 qtllslrtetmlsLPVLMIFLLIYYTSSAIFLGiSPCGDTVFPTLVVGATVGRIVGLVvflivspg-----------srs 601  Trypanosoma bruc...
XP_816207  560 qtllswhteemlgAPVLVIFLSIYFLASALFLGvSLGGDTLLPGLVIGAAVGRLFGIGvhyaavsvvg-------aeaas 632  Trypanosoma cruz...
CAJ06203   529 qtllsqrteyllpWPALLTFSVIYFFASAVYSGlALCGDIILPSLVIGAAIGRCIGAAvhsvavahs---------kdaa 599  Leishmania major
Feature 1                                                                     # 
P51788     492 yrivPGGYAVVGAAALAGAV-THTVSTAVIVFELTGqIAHILPVMIAVILANAVAQSLq-PSLYD 554  human
CAA96065   500 lnieEGTYALLGAASFLGGSmRMTVSLCVIMVEITNnLKLLPLIMLVLLISKAVGDAFn-EGLYE 563  thale cress
CAC22644   586 awmdPGVFALIGAGAFLAGTsRMSMAICVIMVELSAeLHYLLPVMVAIVMSKTTADWLc-EPLYH 649  Leishmania major
P51792     509 dcitPGLYAMVGAAACLGGVtRMTVSLVVIVFELTGgLEYIVPLMAAVMTSKWVGDAFgrEGIYE 573  Norway rat
NP_000076  459 npimPGGYALAGAAAFSGAV-THTISTALLAFEVTGqIVHALPVLMAVLAANAIAQSCq-PSFYD 521  human
CAJ08868   574 lwadEGVVALIGAAAYFAGIsRLTFALVVVMMELTAdVSHITCLMLGILLAKGIADKCc-HSFYH 637  Leishmania major
XP_827183  571 awmdPGLFALIGAGAFLAGItRMTMSICVIMMELSSeLHYLLPTMVAIIIAKAVAGLIa-EPLYH 634  Trypanosoma brucei TREU927
XP_829726  567 vwadPGVLSLIGAASYFSGIsRLSFSLIVIMMEMTAdLTHITCLMVGVVFARALADRFc-HSLYH 630  Trypanosoma brucei TREU927
XP_823375  602 swadPGIFALIGAGSFVGGTtGLAFSICTILMESTGqFQHMLPLMVGIMIAKKTAEIFt-HNINA 665  Trypanosoma brucei TREU927
XP_816207  633 swadPGCFALIGAGSFLGGTtGLTFSICTILMESTSdFQHLLPLMMGITIAKKTAELFt-QNINT 696  Trypanosoma cruzi strain CL Brener
CAJ06203   600 twadPGVFALFGAGSFVSATsGLSFSIGAILIECTAdFRHLLPLMFSIAVARRVLLRWg-RDVHT 663  Leishmania major

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