1IL2,1G51


Conserved Protein Domain Family
AspRS_core

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cd00777: AspRS_core 
Click on image for an interactive view with Cn3D
Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Statistics
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PSSM-Id: 238400
Aligned: 32 rows
Threshold Bit Score: 396.175
Created: 24-Sep-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 22 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1L2_A: E.coli asprS bound to aspartyl-adenylate and 3' end of tRNA using 3.5 A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                        ###                   # #  #                  #
1IL2_A      138 LKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRvhkGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFR 217 Escherichia coli
NP_757675   140 IINRGKIINLFRSFLVKNNFNEIETPYLSKQTPEGARDYLVPTRs--KKFFALPQSPQIYKQLLMVSGMDRYFQIARCFR 217 Mycoplasma penet...
Q8KCT7      154 IIFRSKLTAAVRKYLTDLDFIEIQTPILTSSSPEGARDFLVPSRlhpGKFYALPQAPQQFKQLLMVAGFPRYFQIAPCFR 233 Chlorobium tepidum
O51402      139 IILRCQATHLIRNFLIKRKFLELETPTFVKSTPEGARDFVIPSRihkGSFYALPQSPQLYKQLIMIAGFDKYFQIARCYR 218 Lyme disease spi...
NP_852967   140 MKLRSDFFLIVRNFLTSQGFIEIETPILSKTTPEGARDYVVPSRlgpNMFYALPQSAQIYKQLLMISGFERYFQISRCFR 219 Mycoplasma galli...
Q9PQK5      136 FELRSKVYQAFRNYLYSQDFIETETPILAKPTPEGARDFYVPTRt--RKFYALPQSPQTFKQLLMVAGFQKYFQITKCFR 213 Ureaplasma parvum
Q9F323      142 IMLRTSVISSIRSKMVALGFNEMATPILTATSPEGARDFVVPSRlhaGRFYALPQAPQQFKQLLMISGFDRYFQIAPCFR 221 Streptomyces coe...
ZP_00061993 208 ILFRSQVISFLRQKMTEMGFVEIQTPILSASSPEGARDYIVPSRkhkGKFYALPQAPQIYKQLLMVSGFDKYFQIAPCFR 287 Clostridium ther...
NP_326163   143 IIFRSKFINALRTFLIENDFVEIETPILSKSTPEGARDFLVPTRn-kNKFFSLPQSPQLYKQLLMASGFERYFQIARAFR 221 Mycoplasma pulmonis
P47282      129 LLLRHQFILAIRNWFNQQGFIEIETPTLSKSTPEGAQDFLVPARirkDCFYALVQSPQIYKQLLMIAGVEKYFQIARVYR 208 Mycoplasma genit...
Feature 1        #    ###   # #                                                                 
1IL2_A      218 DEDLRADRQP-EFTQIDVETSFMTAPQVREVMEALVRHLWLEVkgv----dlGDFPVMTFAEAERRYGsdkpdlrnpmel 292 Escherichia coli
NP_757675   218 DEDLRADRQP-EFTQIDIETSFLSDLEIQSIVQEMFIYVFKEFfni---klkTPFTRMSYSDAIEYYGsdkpdirfenki 293 Mycoplasma penet...
Q8KCT7      234 DEDARADRSPgEFYQIDIEMSFIEQDDLFVILEGMFKHLVENMshkr--itqFPFPRISYKDVMNRYGsdkpdlriplei 311 Chlorobium tepidum
O51402      219 DEDSRGDRQP-EFTQLDLEMSFVKKENIFKLIENMLFLIFKNCini---nlpKKFKKITYKKAMNKYGsdkpdtrfelel 294 Lyme disease spi...
NP_852967   220 DEDLRKDRQP-EHVQIDMEVSFMSKEQFFKLVEAMFIHIFDRLmnv---kiePNFMRMSYDEAMNRFGtdkpdlrfgcel 295 Mycoplasma galli...
Q9PQK5      214 DEDLRSDRQP-EFTQVDIELSFADEIEIQTLIENLLKYVFKQTinv---dltTPFMRMSYEQAINDYGsdkpdlrfdlki 289 Ureaplasma parvum
Q9F323      222 DEDARADRSPgEFYQLDVEMSFVEQEDVFRPIEQLMTELFEEFgngr--hvtSPFPRIPFREAMLKYGsdkpdlraqlel 299 Streptomyces coe...
ZP_00061993 288 DEDARADRSPgEFYQLDFEMSFATQEDVFRVGEEVLTATFKKFapegyeiteAPFPVFSYKQAMLEFGtdkpdlrnplri 367 Clostridium ther...
NP_326163   222 DEDSRKDRQP-EFSQLDMEISFQDEKVLHSITEKMLVYAFEKMnik----ieAPFERLSFDYVMQNYGsdkpdlryevki 296 Mycoplasma pulmonis
P47282      209 DEDSRKDRQP-EHTQIDFEISFCNQKMIMNLVEKLFFSVFLDVfqi---kikKTFPVFKFSELFERFGsdkpdlrygfei 284 Mycoplasma genit...
Feature 1                                                                                       
1IL2_A      293 tdvadllksvefavfagpandpkgrvaalrvpggasltrkqideygnfvkiygakglayikvnerakgleginspvakfl 372 Escherichia coli
NP_757675   294 mnltnyfkdtnfkifksiyesknrisavfvednivkqdikkleklaqdnkakglayl-------yiengkmssgsianvi 366 Mycoplasma penet...
Q8KCT7      312 qdvtelfvnsgfkvfasntaegscvkamvlkgmgnesrlfydkaekrarelgsagla-------yiqfkeegpkgpvvkf 384 Chlorobium tepidum
O51402      295 qdisrnlknsefnifkdtlknkgsikilivkdkadkfsrakinnleeiaklyktqgly-----ftkiennkfsggiakfl 369 Lyme disease spi...
NP_852967   296 vdvgaafvdhefsvfkqfalknrlkaivldeilisykehkvlekyakdnyakglsw---------fsydqnqiidgsikr 366 Mycoplasma galli...
Q9PQK5      290 ktlntyfensktlffqkallnnqsirailvpninlnkkqvqtlekfakdkgakglsw------isikdekiidgsllsiq 363 Ureaplasma parvum
Q9F323      300 vditdvfegsefkafagkhvralpvpdvsgqprrffdqlgdyavsqgakglawvr----------vgedgklsgpiakfl 369 Streptomyces coe...
ZP_00061993 368 idvtdffqrcafkpfhnktvraikvhadmskgfheklleyalsigmgglgylev------------qedmtykgpidkyi 435 Clostridium ther...
NP_326163   297 qdlkkyfekssfeiisskkfikglfikeiitkndfktleeiakknganilfyss------------veqgkisrtnfank 364 Mycoplasma pulmonis
P47282      285 kdftslfqdhqnqftklieakgiiggieltnielstdkikalrkiakd------------------------hdvslevh 340 Mycoplasma genit...
Feature 1                                                                                   ##  
1IL2_A      373 naeiiedildrtaaqdgdmiffgadnkkivadamgalrlkvgkdlgltdeskWAPLWVIDFPMFEDDGe-GGLTAMHHPF 451 Escherichia coli
NP_757675   367 eseiiekickdnklsngtlffvadkyeitqqalgairkefvniskkikmneeFAFLWVVDWPLFEYSEeeKRYVSAHHPF 446 Mycoplasma penet...
Q8KCT7      385 lseaemnalkerlgivtgdvvffgagkwektckimggmrnyfadlfpldkdeLSFCWIVDFPMFEYNEedKKIDFSHNPF 464 Chlorobium tepidum
O51402      370 kteeqeliktyslenndiifftannnwetackamgqirikiandlglidenkFEFLWVYDFPLFEYDEntKTYSPAHHMF 449 Lyme disease spi...
NP_852967   367 fissddlknlgllnkkgtiffvgdddlnvinkslgavrsqlnelyqlanedeYKFLWIVDWPLYEWDDktNSYQSAHNLF 446 Mycoplasma galli...
Q9PQK5      364 edhiiyktifkdfnlstgsillvadtfdiasqalglvrinlasilnlkkpniFKFVWIIDWPLYEYDNeaQRFVAAHHPF 443 Ureaplasma parvum
Q9F323      370 teenvaeltkrlslapghavffgagefdevskimgavrveaakraghfeenvFRFCWIVDFPMYEKDEetGKIDFSHNPF 449 Streptomyces coe...
ZP_00061993 436 pqelkgelaqisglipgdviffiadkeklackyaglirnelgkrldiceknaYRFCYVNDFPMYEMDEetGKIEFTHNPF 515 Clostridium ther...
NP_326163   365 dkesvekiiedfsiengtffivasdfenkvllslgatrvelnsifkwankdqYKFAWIIDWPLFEYDEntNTYSPSHHPF 444 Mycoplasma pulmonis
P47282      341 nknnstlktsikcdekntlllvankskkkawtalgairnelkyhldivkpnqYSFCWVVDFPLYDFDEktNQWISNHNIF 420 Mycoplasma genit...
Feature 1                                     #  #   #                                         #
1IL2_A      452 TSPKDmtaaeLKAAPEnaVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGineeeqrEKFGFLLDALKYGTPPHAGL 531 Escherichia coli
NP_757675   447 TMPTAetldtFDKDPAnaKAIAYDLVLNGFEIGGGSLRIYNSELQTRMFKFLGlndsqvkEKFGFIINAFKYGVPPHGGI 526 Mycoplasma penet...
Q8KCT7      465 SMPQGemealESKFPLdiLAYQYDIVCNGIELSSGAIRNHRPDIMYKAFEIAGyskeevdARFGHMIEAFKHGAPPHGGI 544 Chlorobium tepidum
O51402      450 SLPKKqyianLEKNPKktIGEIYDLVLNGVELGSGSIRIHNKELQQRIFKIIGfqkekseDRFGFFLKALEYGAPNHGGI 529 Lyme disease spi...
NP_852967   447 TAPEAkylstFNEDKAnaKAASYDLVLNGFELGSGAIRITDPSLQKAVMSSLGlseaemnDKFGFLLDAYQYGAPQHCGI 526 Mycoplasma galli...
Q9PQK5      444 TMPTLetlntFDVNKKdaRGRSYDIVLNGYELGGGSVRIIDQQIQRRMFKSINmsdeeanLKFGFLLTAFEYGVPPHCGI 523 Ureaplasma parvum
Q9F323      450 SMPQGgmdalENQDPLdiLAWQYDIVCNGVELSSGAIRNHEPEIMLKAFEIAGydaetveREFAGMLRAFRFGAPPHGGI 529 Streptomyces coe...
ZP_00061993 516 SMPQGglealNTKGPLdiLAYQYDIVCNGVELSSGAVRNHDLDIMVKAFEIAGydeetlkKKFGALYNAFQYGAPPHAGM 595 Clostridium ther...
NP_326163   445 TMYDEstlvdGKISYEktKAKSYDLVLNGYELVSGSVRIYKKEIQAQIFKLLNlsqkeieDKFGFFLKAFDYGLPPHCGL 524 Mycoplasma pulmonis
P47282      421 SKPKQewidnFESNKNeaLSEQFDLVLNGFEIGSGSIRINDPIVQKRLMNSLNid----pNKFAFLLEAYQYGAPVHGGM 496 Mycoplasma genit...
Feature 1       # #  #                      
1IL2_A      532 AFGLDRLTMLLTGTDNIRDVIAFPKTTA 559 Escherichia coli
NP_757675   527 AFGIERILMIMLNTNSIRDVIAFPKNSS 554 Mycoplasma penetrans
Q8KCT7      545 APGLDRLVMILRDEQNIREVIAFPMNQS 572 Chlorobium tepidum
O51402      530 AIGIDRLIMLMTKSTSIKDVILFPKNSF 557 Lyme disease spirochete
NP_852967   527 GLGSDRLLMILTKSKSIRDVIAFPKNNQ 554 Mycoplasma gallisepticum R
Q9PQK5      524 ALGLDRLMMILVNSEYIRDVVAFPKNNN 551 Ureaplasma parvum
Q9F323      530 APGVDRIVMLLADEPNIRETIAFPLNGN 557 Streptomyces coelicolor
ZP_00061993 596 APGIERMIMLLRNEENIREVVAFPMNSN 623 Clostridium thermocellum ATCC 27405
NP_326163   525 AFGIERLIMIMTQSESIREVIAFPKTSS 552 Mycoplasma pulmonis
P47282      497 GLGIDRLMMILNQTDNIREVIAFPKNNH 524 Mycoplasma genitalium

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