1E24,1G51,1BBU,1IL2,1B8A


Conserved Protein Domain Family
Asp_Lys_Asn_RS_core

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cd00669: Asp_Lys_Asn_RS_core 
Click on image for an interactive view with Cn3D
Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Statistics
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PSSM-Id: 238358
Aligned: 6 rows
Threshold Bit Score: 334.06
Created: 24-Sep-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 26 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1L2_A; E.coli aspRS bound to aspartyl-adenylated and 3' end of tRNA

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                #  #                 
1E24_A    183 FVVRSKILAAIRQFMVAR-GFMEVETPMMQVipggasaRPFITHHNa-lDLDMYLRIAPELYLKRLVVGgfERVFEINRN 260 Escherichia coli
1G51_A    144 LRLRHRVIKAIWDFLDRE-GFVQVETPFLTKstp-egaRDFLVPYRhepGLFYALPQSPQLFKQMLMVAglDRYFQIARC 221 Thermus thermophilus
EAA41991  233 IVQRSGIINFIRRFMIDQrNYLEVETPMLQTvhggaaaQPFVCKSNd-lGHDVYLRIAPELFLKRLVVGglNRVFEINKN 311 Giardia lamblia AT...
1BBU_A    183 FKVRSQILSGIRQFMVNR-GFMEVETPMMQVipggaaaRPFITHHNa-lDLDMYLRIAPELYLKRLVVGgfERVFEINRN 260 Escherichia coli
1IL2_A    138 LKTRAKITSLVRRFMDDH-GFLDIETPMLTKatp-egaRDYLVPSRvhkGKFYALPQSPQLFKQLLMMSgfDRYYQIVKC 215 Escherichia coli
1B8A_A    137 FKIRSSVFKAVRDFFHEN-GFIEIHTPKIIAtateggtELFPMKYF---EEDAFLAESPQLYKEIMMASglDRVYEIAPI 212 Thermococcus kodak...
Feature 1      # # # ## ##  # #                                                               
1E24_A    261 FRNE-GISVRHNPEFTMMELYMAYa-dYHDLIELTESLFRTLAQEVlgttkvty-----------------gehvfdfgK 321 Escherichia coli
1G51_A    222 FRDE-DLRADRQPDFTQLDLEMSFv-eVEDVLELNERLMAHVFREAlgv---------------------------elpL 272 Thermus thermophilus
EAA41991  312 FRNE-SSDQTHSPEFTMMEAYSAYd-dLEDMCDLIEGLVSRLVRWYnitynhvrlpdekkhykltfvshkgetydidfsR 389 Giardia lamblia AT...
1BBU_A    261 FRNE-GISVRHNPEFTMMELYMAYa-dYKDLIELTESLFRTLAQDIlgktevty-----------------gdvtldfgK 321 Escherichia coli
1IL2_A    216 FRDE-DLRADRQPEFTQIDVETSFm-tAPQVREVMEALVRHLWLEVkgv----------------------------dlG 265 Escherichia coli
1B8A_A    213 FRAEeHNTTRHLNEAWSIDSEMAFiedEEEVMSFLERLVAHAINYVrehnakeldi--------------lnfeleepkL 278 Thermococcus kodak...
Feature 1                                                                                     
1E24_A    322 PFEKLTMREAIKKYRpetdmadldnfdaakalaesigit----------------------------------------- 360 Escherichia coli
1G51_A    273 PFPRLSYEEAMERYGsdkpdlrfglelkevgplfrqsgfrvfqeaesvkalalpkalsrkevaeleevakrhkaqglawa 352 Thermus thermophilus
EAA41991  390 PWRRVPIIETLEQLLsikfprpldgeecngflvsllerldl--------------------------------------- 430 Giardia lamblia AT...
1BBU_A    322 PFEKLTMREAIKKYRpetdmadldnfdsakaiaesigih----------------------------------------- 360 Escherichia coli
1IL2_A    266 DFPVMTFAEAERRYGsdkpdlrnpmeltdvadllksvefavfagpandpkgrvaalrvpggasltrkqideygnfvkiyg 345 Escherichia coli
1B8A_A    279 PFPRVSYDKALEILGdlgkeipwgedidte-------------------------------------------------- 308 Thermococcus kodak...
Feature 1                                                                                     
1E24_A    361 --------------------------------------------------------vekswglgrivteifdevaeahli 384 Escherichia coli
1G51_A    353 r--------------veeggfsggvakflepvreallqatearpgdtllfvagprkvaatalgavrlraadllglkregf 418 Thermus thermophilus
EAA41991  431 -------------------------------------------------------eckpplttarmldklveryletltp 455 Giardia lamblia AT...
1BBU_A    361 --------------------------------------------------------vekswglgrivteifeevaeahli 384 Escherichia coli
1IL2_A    346 akglayikvnerakgleginspvakflnaeiiedildrtaaqdgdmiffgadnkkivadamgalrlkvgkdlgltdeskw 425 Escherichia coli
1B8A_A    309 -----------------------------------------------------------------gerllgkymmenena 323 Thermococcus kodak...
Feature 1            #               ##                                # ##   #               
1E24_A    385 QPTFITEYPAe------------VSPLARRNDvn---------peITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQv 443 Escherichia coli
1G51_A    419 RFLWVVDFPLlewdeeeeawtymHHPFTSPHPedlpllekdpgrvRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLg 498 Thermus thermophilus
EAA41991  456 NPIFLMYHPVl------------MSPLAKPHRsi---------peLAERFEVFISCFEVSNAYTELNNPIIQRENFQAQi 514 Giardia lamblia AT...
1BBU_A    385 QPTFITEYPAe------------VSPLARRNDvn---------peITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQv 443 Escherichia coli
1IL2_A    426 APLWVIDFPMfeddge-ggltamHHPFTSPKDmtaaelkaapenaVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILg 504 Escherichia coli
1B8A_A    324 PLYFLYQYPSe-----------aKPFYIMKYDnk---------peICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKg 383 Thermococcus kodak...
Feature 1                                  ### #  #           #       ## 
1E24_A    444 nakaagddeamfydedyVTALEYGLPPTAGLGIGIDRMIMLFTNshTIRDVILFPAMRP 502 Escherichia coli
1G51_A    499 igeeeq----rekfgffLEALEYGAPPHGGIAWGLDRLLALMTGspSIREVIAFPKNKE 553 Thermus thermophilus
EAA41991  515 rdkaagdmdameydedfCKCLDYGLPPTGGIGIGIDRLVMLLTNssTIREVIAFPLMGR 573 Giardia lamblia ATCC 50803
1BBU_A    444 aakdagddeamfydedyVTALEHGLPPTAGLGIGIDRMVMLFTNshTIRDVILFPAMRP 502 Escherichia coli
1IL2_A    505 ineeeq----rekfgflLDALKYGTPPHAGLAFGLDRLTMLLTGtdNIRDVIAFPKTTA 559 Escherichia coli
1B8A_A    384 lnpe--------sfefyLKAFRYGMPPHGGFGLGAERLIKQMLDlpNIREVILFPRDRR 434 Thermococcus kodakaraensis

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