Conserved Protein Domain Family
Sig-70_gvs1
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TIGR02989: Sig-70_gvs1 
RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family
This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).
Links
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Statistics
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PSSM-Id: 274379
Aligned: 12 rows
Threshold Bit Score: 173.276
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
WP_007333034  26 KAFEDLLQQAQRPVLGHLIRLTGSVHAAQDVLQSANVTAMEKQNAFEEGTN-----FVAWLSQIAINHHRNQTRKLATS- 99  Rhodopirellula ...
WP_009962046  14 ETFVRLFVHHEGRLRGFLRTLVRDWDDVDEVMQETSLVAWRKFSQFDPDTN-----FMAWAAAIARFEALKHLRKQSRD- 87  Verrucomicrobiu...
WP_009962042   9 RALVPLLMRHERQIFAYIYTLVPHRHDAEDILQETCLTIYDKFQEFTPGTD-----FLAWAMRIAWWKVRQARQKYARS- 82  Verrucomicrobiu...
WP_029190647  10 tRFLRVFTAHEMAIRAYVRRLVPSRADADDVMQEVAVVLWEKFATFRENGD-----FRAWAFGIARYEVLSWRRDKGRD- 83  Verrucomicrobiu...
WP_009959723  19 EEFVRLLNGAHALLLRYVMALVANRHDAEDVLQRASVVMWRRFATFEAGTD-----FVAWATTVAFYEVRNFQRVTGRS- 92  Verrucomicrobiu...
WP_009960862  22 DAFLIIVHAYRPSLRAYLASQMYHLDDVDDMAQETFIAAYRGLPKFRLDQD-----FGAWLRGIARNKLLKYFEKTGRR- 95  Verrucomicrobiu...
WP_009962495  11 EEFVFLLARHERMLRAYVHALVPHVQDADDILQEAKVRMWRSFSQFESGTN-----FSAWARKVAFHQVLSYRKRRKRD- 84  Verrucomicrobiu...
WP_011120138  19 SDFMRLFVKHETALRAFARSILPNWNAVDDAIQEASVTMWQKFSQLNGEDG-----FLPWAKVILRFKCLNAVTGLRRD- 92  Rhodopirellula ...
WP_007340660  21 nQFVALLTRHDLSIRRFIRSLLANRDAVEDVVQETALECWRKFDDFALQNSghedeFVRWACVIARYKALSWQRDQGRD- 99  Rhodopirellula ...
WP_011122442   6 RQATRQWTLAQPAVSAFVTSMVRDFGDRDDVLQEVAVAVIESYDSYDPELP-----FVPWAIGVARNQVNLYMRNRRKD- 79  Rhodopirellula ...
WP_011119049   4 KEFAKLVLEHQAQLRMFVRMLGAMPDAVDDLAQDAFVVAYERIDTLDDMEN-----AGPWLRSIARNLVRNELRKSSRR- 77  Rhodopirellula ...
WP_009962824  18 KAQAAFVQFYQREVRAFVSMLTADLASVDDLAQETFLRALDRLDRIQQPES-----TGAFLRGIARNVALEHARRYRRQs 92  Verrucomicrobiu...

WP_007333034 100 -RsvVL---IDDQLHEVIERRhrERVEQQRQHNDWQ---RLKHCVEQLPDHQRELIKLFYFDGQTLNQLAEHTGRKANAI 172 Rhodopirellula ...
WP_009962046  88 -R--LV---FNDEILDLLAEE--SLEEVDSLERHRS---ALGKCLEKLDSRQKELLQLAYQPGVKFHEVAAQAGKSAQAF 156 Verrucomicrobiu...
WP_009962042  83 -K--VV---FNDEVLEAVAHTa-E-TMQEETSTMQI---CLAQCLQKLNERDRRMILTRYERGSGVERAAMVSGRSLQAA 151 Verrucomicrobiu...
WP_029190647  84 -R--LV---LDDDVLERLAEE--TVQEEPRLHLQRQ---ALEGCLAKMNAGQRDLLMLAYEEGVSIQTVAQQSGRTVAGF 152 Verrucomicrobiu...
WP_009959723  93 -R--VE---FDDDLMQTLAAE--RMQHVQQWSPRME---ALEACMEKLPSASRDLVDAIYTRGIDAATLAQQEGRAVQTI 161 Verrucomicrobiu...
WP_009960862  96 -H--EAlekFRKDASTFLAKEl-DEEAGRTGAAHLQ---AMLGCIHKLPERMRQVVRG-WMDGGKSTALAEEMQTTVGAV 167 Verrucomicrobiu...
WP_009962495  85 -R--LD---FSDEFLNTVASE--YDNSAEDLEHRER---ALHGCIAKLPEDHREVLQLRYQEGFSLEAMAEKLQRTVAAL 153 Verrucomicrobiu...
WP_011120138  93 -G--RL---LSDEVLKQIADEa-EAIEAERIAEIRS---ALQDCMTEFSRPHQELLMAPYQGNVQLTKLADDCGKTVNAF 162 Rhodopirellula ...
WP_007340660 100 -R--LV---FRDSVVDALATSa--MTRLERREDERQ---AMERCLAKLGRSQRQLVLSVHSPGQSVTSIAKKTGQKARRL 168 Rhodopirellula ...
WP_011122442  80 -L--LV---FDDDAIACLAVa--IPTVAQQDSAKLD---FVTECLGGLENRARRLFELRYQKNMKPAAIAERVDMSANSV 148 Rhodopirellula ...
WP_011119049  78 -R--RV---VNASLSEAMLAMsnEPVTGPWSEDWFT---ALRACVDRLPGHGRALVNGRYTRGQNATQLANETEMTPVAV 148 Rhodopirellula ...
WP_009962824  93 eR--AQ---KFVRLMEDLAPG--EDTQDDWWSDDTEltgALKTCMGTLPEKSRSILDWRYREECDATEIAARLGTTSTAI 165 Verrucomicrobiu...

WP_007333034 173 GQALHRARQRLIRC 186 Rhodopirellula baltica
WP_009962046 157 YKTIQRMRAALLQC 170 Verrucomicrobium spinosum
WP_009962042 152 YKALMRIKQVLHDC 165 Verrucomicrobium spinosum
WP_029190647 153 YQWLHRVRRLLLEC 166 Verrucomicrobium spinosum
WP_009959723 162 YNKLNFIRRSLAEC 175 Verrucomicrobium spinosum
WP_009960862 168 YQLQYRALKLLREC 181 Verrucomicrobium spinosum
WP_009962495 154 YRQLSRVRHVLHEC 167 Verrucomicrobium spinosum
WP_011120138 163 YKLLGRLRVKLSAC 176 Rhodopirellula baltica
WP_007340660 169 YYQLNVLRASLQRC 182 Rhodopirellula baltica
WP_011122442 149 AKALQRIRDRVRNC 162 Rhodopirellula baltica
WP_011119049 149 RQALSRLRGLLRTC 162 Rhodopirellula baltica
WP_009962824 166 RATLKRVRVSLWQC 179 Verrucomicrobium spinosum
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