Conserved Protein Domain Family
Sig-70_gvs1

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TIGR02989: Sig-70_gvs1 
RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family
This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).
Statistics
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PSSM-Id: 274379
View PSSM: TIGR02989
Aligned: 12 rows
Threshold Bit Score: 173.276
Threshold Setting Gi: 497648640
Created: 8-Oct-2014
Updated: 11-Oct-2014
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494554477  26 KAFEDLLQQAQRPVLGHLIRLTGSVHAAQDVLQSANVTAMEKQNAFEEGTN-----FVAWLSQIAINHHRNQTRKLATS- 99
gi 497647862  14 ETFVRLFVHHEGRLRGFLRTLVRDWDDVDEVMQETSLVAWRKFSQFDPDTN-----FMAWAAAIARFEALKHLRKQSRD- 87
gi 497647858   9 RALVPLLMRHERQIFAYIYTLVPHRHDAEDILQETCLTIYDKFQEFTPGTD-----FLAWAMRIAWWKVRQARQKYARS- 82
gi 656244017  10 tRFLRVFTAHEMAIRAYVRRLVPSRADADDVMQEVAVVLWEKFATFRENGD-----FRAWAFGIARYEVLSWRRDKGRD- 83
gi 497645539  19 EEFVRLLNGAHALLLRYVMALVANRHDAEDVLQRASVVMWRRFATFEAGTD-----FVAWATTVAFYEVRNFQRVTGRS- 92
gi 497646678  22 DAFLIIVHAYRPSLRAYLASQMYHLDDVDDMAQETFIAAYRGLPKFRLDQD-----FGAWLRGIARNKLLKYFEKTGRR- 95
gi 497648311  11 EEFVFLLARHERMLRAYVHALVPHVQDADDILQEAKVRMWRSFSQFESGTN-----FSAWARKVAFHQVLSYRKRRKRD- 84
gi 499432674  19 SDFMRLFVKHETALRAFARSILPNWNAVDDAIQEASVTMWQKFSQLNGEDG-----FLPWAKVILRFKCLNAVTGLRRD- 92
gi 494573951  21 nQFVALLTRHDLSIRRFIRSLLANRDAVEDVVQETALECWRKFDDFALQNSghedeFVRWACVIARYKALSWQRDQGRD- 99
gi 499434978   6 RQATRQWTLAQPAVSAFVTSMVRDFGDRDDVLQEVAVAVIESYDSYDPELP-----FVPWAIGVARNQVNLYMRNRRKD- 79
gi 499431585   4 KEFAKLVLEHQAQLRMFVRMLGAMPDAVDDLAQDAFVVAYERIDTLDDMEN-----AGPWLRSIARNLVRNELRKSSRR- 77
gi 497648640  18 KAQAAFVQFYQREVRAFVSMLTADLASVDDLAQETFLRALDRLDRIQQPES-----TGAFLRGIARNVALEHARRYRRQs 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494554477 100 -RsvVL---IDDQLHEVIERRhrERVEQQRQHNDWQ---RLKHCVEQLPDHQRELIKLFYFDGQTLNQLAEHTGRKANAI 172
gi 497647862  88 -R--LV---FNDEILDLLAEE--SLEEVDSLERHRS---ALGKCLEKLDSRQKELLQLAYQPGVKFHEVAAQAGKSAQAF 156
gi 497647858  83 -K--VV---FNDEVLEAVAHTa-E-TMQEETSTMQI---CLAQCLQKLNERDRRMILTRYERGSGVERAAMVSGRSLQAA 151
gi 656244017  84 -R--LV---LDDDVLERLAEE--TVQEEPRLHLQRQ---ALEGCLAKMNAGQRDLLMLAYEEGVSIQTVAQQSGRTVAGF 152
gi 497645539  93 -R--VE---FDDDLMQTLAAE--RMQHVQQWSPRME---ALEACMEKLPSASRDLVDAIYTRGIDAATLAQQEGRAVQTI 161
gi 497646678  96 -H--EAlekFRKDASTFLAKEl-DEEAGRTGAAHLQ---AMLGCIHKLPERMRQVVRG-WMDGGKSTALAEEMQTTVGAV 167
gi 497648311  85 -R--LD---FSDEFLNTVASE--YDNSAEDLEHRER---ALHGCIAKLPEDHREVLQLRYQEGFSLEAMAEKLQRTVAAL 153
gi 499432674  93 -G--RL---LSDEVLKQIADEa-EAIEAERIAEIRS---ALQDCMTEFSRPHQELLMAPYQGNVQLTKLADDCGKTVNAF 162
gi 494573951 100 -R--LV---FRDSVVDALATSa--MTRLERREDERQ---AMERCLAKLGRSQRQLVLSVHSPGQSVTSIAKKTGQKARRL 168
gi 499434978  80 -L--LV---FDDDAIACLAVa--IPTVAQQDSAKLD---FVTECLGGLENRARRLFELRYQKNMKPAAIAERVDMSANSV 148
gi 499431585  78 -R--RV---VNASLSEAMLAMsnEPVTGPWSEDWFT---ALRACVDRLPGHGRALVNGRYTRGQNATQLANETEMTPVAV 148
gi 497648640  93 eR--AQ---KFVRLMEDLAPG--EDTQDDWWSDDTEltgALKTCMGTLPEKSRSILDWRYREECDATEIAARLGTTSTAI 165
                        170
                 ....*....|....
gi 494554477 173 GQALHRARQRLIRC 186
gi 497647862 157 YKTIQRMRAALLQC 170
gi 497647858 152 YKALMRIKQVLHDC 165
gi 656244017 153 YQWLHRVRRLLLEC 166
gi 497645539 162 YNKLNFIRRSLAEC 175
gi 497646678 168 YQLQYRALKLLREC 181
gi 497648311 154 YRQLSRVRHVLHEC 167
gi 499432674 163 YKLLGRLRVKLSAC 176
gi 494573951 169 YYQLNVLRASLQRC 182
gi 499434978 149 AKALQRIRDRVRNC 162
gi 499431585 149 RQALSRLRGLLRTC 162
gi 497648640 166 RATLKRVRVSLWQC 179
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