Conserved Protein Domain Family
SigE-fam_strep

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TIGR02983: SigE-fam_strep 
RNA polymerase sigma-70 factor, sigma-E family
This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.
Statistics
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PSSM-Id: 132028
View PSSM: TIGR02983
Aligned: 14 rows
Threshold Bit Score: 112.098
Threshold Setting Gi: 29608082
Created: 8-Oct-2014
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
BAC72273      28 AGTTVDHLTETYRAHYRSLLGLAALLL-DDTASCEDVVQEAFIRVHSARKRVRDPEKTLAYLRQTVVNLSRSALR----- 101 Streptomyces av...
CAC40609       2 RQGRADEYAEFAVARAGHLYRSACLLTaGDTHLAEDLVQETFGRLYVRWGRVSRAENPAAYAQTVLTRAFLAHQR----- 76  Streptomyces co...
BAC74052      23 DAAGQESFREFVANRSSALLKTAVLLSgGDRHAAEDLLQNALIKAADRWSRI---DEPEAYVRQVLYRQQVSRWR----- 94  Streptomyces av...
BAC71919       1 -----------MKARQPVLLRTARSLT-ANPSDAEDLLQTALAKTYVAWERIEDHRALDGYVRRALLNTRTSQWR----- 63  Streptomyces av...
BAC72418       2 AHGEVLEFEEYVRTRQDALLRSARRLV-PDPVDAQDLLQTALVRTYGRWDGIADKRLADAYLRRVMINTRTEWWR----- 75  Streptomyces av...
BAC72137       5 PPSPREDFAAYAAHAWPRLVRTAHLLT-GDPHEAADLARTALADAYARRRRIPR-DDADFHVRRTLVRAHL---R----- 74  Streptomyces av...
CAC38811       5 VDDAAGEFRAFFERHYAELARLAHLLT-GEPDAADDLAADALLALWHRWDRVRAADHPVAYARGVVANLARTRVRaavre 83  Streptomyces co...
jgi:Tfu_0842  13 RWDADQAVTQLYSDHYRPLVRLAALLV-RDVATAEEVVQDAFVAMHGAWRRLRDPNKALSYLRQAVVNKARSVLR----- 86  Thermobifida fu...
BAC72139       7 GGMTEEEFDAFYATAFPRLTGQLYAFT-GDHGEAQDVVQEAFVRAWDRRREFLADGAPEAWIRTVAMRLAVSRWR----- 80  Streptomyces av...
WP_003955713   2 ktSAEIEFRAFVVSRWPRMLRTARLLT-GNHHDAEDLVQSALVKTYVKWERVRRADEPDAYVWRILLNTNADRAR----- 75  Streptomyces cl...
BAC72273     102 RRILgLKLLSKPMPDMAs--AEEGAYdqLERDSLIKAMKGLQRRQREVLVLRYFADMTEAQVAETLGISLGSVKAYGSRG 179 Streptomyces av...
CAC40609      77 RRSS-GERATDVFPDLPg--AGDGDA--SLRLTLLDALARLPAKDRAVVVLRYWDDRSVEQTADVLGVSSAAVRTRCSRA 151 Streptomyces co...
BAC74052      95 LKWRrRELSVAEPPEASt--GPDAASaaELRLVMRGALARLTARQRTVLVLRYFEDLPEADVARILGCSVGTVRSTTHRS 172 Streptomyces av...
BAC71919      64 KRKV-DEFACEELPEPEgvtAGDPAEqqALHDAMWRAITKLPARQRAMVVLRYYEDLSEAQTAEVLGVSVGTVKSAVSRA 142 Streptomyces av...
BAC72418      76 ARKL-EEVPTEQLPDAS---VDDSTEqhADRALLMDILKVLAPKQRSVVVLRHWEQMSTEETAAALGMSAGTVKSTLHRA 151 Streptomyces av...
BAC72137      75 RRRP----------------APAPAP-------LARALAALPARQRVVLVLRHGEGLAEAEIAETLGCSVGTVKSYARRG 131 Streptomyces av...
CAC38811      84 RRRVaLFWSQRE--------ERTENPdvAGVVDVREALRRLPFRKRACVVLRHSFDLSEKDTALALGISVGTVKSQTSKG 155 Streptomyces co...
jgi:Tfu_0842  87 HRAVvEKHAPKALPDAPs--AEHGALneLERAEVVNALRALPTRQREAIVLRYYGDLSEAQIADAMGISRGAVKSHTARG 164 Thermobifida fu...
BAC72139      81 RARRwLELVRRNPPPEH---TPGPGP---ERAQLVAALRKLPEVQRMAVVLHHLCDLSVEQVASETGAPVGTVKARLSRG 154 Streptomyces av...
WP_003955713  76 LKRV-REWLTPCFPETV---APDRVDgiAEAGAVAQALRRLPARQRAVIVLRYLEDRSESEVAHILGTHVGTVRSHAARA 151 Streptomyces cl...
BAC72273     180 IAALRIAMEEPV 191 Streptomyces avermitilis MA-4680 = NBRC 14893
CAC40609     152 LGRLRELLGEDL 163 Streptomyces coelicolor A3(2)
BAC74052     173 LARLRTLAPELA 184 Streptomyces avermitilis MA-4680 = NBRC 14893
BAC71919     143 LGKLREDPELEP 154 Streptomyces avermitilis MA-4680 = NBRC 14893
BAC72418     152 LARLREELESRD 163 Streptomyces avermitilis MA-4680 = NBRC 14893
BAC72137     132 LAALSALPLSGV 143 Streptomyces avermitilis MA-4680 = NBRC 14893
CAC38811     156 VAELQRLLGTRT 167 Streptomyces coelicolor A3(2)
jgi:Tfu_0842 165 ISTLRKLLEQTK 176 Thermobifida fusca YX
BAC72139     155 RAALARELATGD 166 Streptomyces avermitilis MA-4680 = NBRC 14893
WP_003955713 152 LYRLREQPGvlq 163 Streptomyces clavuligerus
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