Conserved Protein Domain Family
SigE-fam_strep

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TIGR02983: SigE-fam_strep 
RNA polymerase sigma-70 factor, sigma-E family
This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.
Statistics
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PSSM-Id: 132028
View PSSM: TIGR02983
Aligned: 14 rows
Threshold Bit Score: 112.098
Threshold Setting Gi: 29608082
Created: 8-Oct-2014
Updated: 23-Jan-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29608218   28 AGTTVDHLTETYRAHYRSLLGLAALLL-DDTASCEDVVQEAFIRVHSARKRVRDPEKTLAYLRQTVVNLSRSALR----- 101
gi 14285290    2 RQGRADEYAEFAVARAGHLYRSACLLTaGDTHLAEDLVQETFGRLYVRWGRVSRAENPAAYAQTVLTRAFLAHQR----- 76
gi 29610004   23 DAAGQESFREFVANRSSALLKTAVLLSgGDRHAAEDLLQNALIKAADRWSRI---DEPEAYVRQVLYRQQVSRWR----- 94
gi 29607863    1 -----------MKARQPVLLRTARSLT-ANPSDAEDLLQTALAKTYVAWERIEDHRALDGYVRRALLNTRTSQWR----- 63
gi 29608364    2 AHGEVLEFEEYVRTRQDALLRSARRLV-PDPVDAQDLLQTALVRTYGRWDGIADKRLADAYLRRVMINTRTEWWR----- 75
gi 29608082    5 PPSPREDFAAYAAHAWPRLVRTAHLLT-GDPHEAADLARTALADAYARRRRIPR-DDADFHVRRTLVRAHL---R----- 74
gi 14041600    5 VDDAAGEFRAFFERHYAELARLAHLLT-GEPDAADDLAADALLALWHRWDRVRAADHPVAYARGVVANLARTRVRaavre 83
gi 71914978   13 RWDADQAVTQLYSDHYRPLVRLAALLV-RDVATAEEVVQDAFVAMHGAWRRLRDPNKALSYLRQAVVNKARSVLR----- 86
gi 29608084    7 GGMTEEEFDAFYATAFPRLTGQLYAFT-GDHGEAQDVVQEAFVRAWDRRREFLADGAPEAWIRTVAMRLAVSRWR----- 80
gi 490053395   2 ktSAEIEFRAFVVSRWPRMLRTARLLT-GNHHDAEDLVQSALVKTYVKWERVRRADEPDAYVWRILLNTNADRAR----- 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29608218  102 RRILgLKLLSKPMPDMAs--AEEGAYdqLERDSLIKAMKGLQRRQREVLVLRYFADMTEAQVAETLGISLGSVKAYGSRG 179
gi 14285290   77 RRSS-GERATDVFPDLPg--AGDGDA--SLRLTLLDALARLPAKDRAVVVLRYWDDRSVEQTADVLGVSSAAVRTRCSRA 151
gi 29610004   95 LKWRrRELSVAEPPEASt--GPDAASaaELRLVMRGALARLTARQRTVLVLRYFEDLPEADVARILGCSVGTVRSTTHRS 172
gi 29607863   64 KRKV-DEFACEELPEPEgvtAGDPAEqqALHDAMWRAITKLPARQRAMVVLRYYEDLSEAQTAEVLGVSVGTVKSAVSRA 142
gi 29608364   76 ARKL-EEVPTEQLPDAS---VDDSTEqhADRALLMDILKVLAPKQRSVVVLRHWEQMSTEETAAALGMSAGTVKSTLHRA 151
gi 29608082   75 RRRP----------------APAPAP-------LARALAALPARQRVVLVLRHGEGLAEAEIAETLGCSVGTVKSYARRG 131
gi 14041600   84 RRRVaLFWSQRE--------ERTENPdvAGVVDVREALRRLPFRKRACVVLRHSFDLSEKDTALALGISVGTVKSQTSKG 155
gi 71914978   87 HRAVvEKHAPKALPDAPs--AEHGALneLERAEVVNALRALPTRQREAIVLRYYGDLSEAQIADAMGISRGAVKSHTARG 164
gi 29608084   81 RARRwLELVRRNPPPEH---TPGPGP---ERAQLVAALRKLPEVQRMAVVLHHLCDLSVEQVASETGAPVGTVKARLSRG 154
gi 490053395  76 LKRV-REWLTPCFPETV---APDRVDgiAEAGAVAQALRRLPARQRAVIVLRYLEDRSESEVAHILGTHVGTVRSHAARA 151
                        170
                 ....*....|..
gi 29608218  180 IAALRIAMEEPV 191
gi 14285290  152 LGRLRELLGEDL 163
gi 29610004  173 LARLRTLAPELA 184
gi 29607863  143 LGKLREDPELEP 154
gi 29608364  152 LARLREELESRD 163
gi 29608082  132 LAALSALPLSGV 143
gi 14041600  156 VAELQRLLGTRT 167
gi 71914978  165 ISTLRKLLEQTK 176
gi 29608084  155 RAALARELATGD 166
gi 490053395 152 LYRLREQPGvlq 163
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