Conserved Protein Domain Family
rpoC1_cyan
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TIGR02387: rpoC1_cyan 
DNA-directed RNA polymerase, gamma subunit
The RNA polymerase gamma subunit, encoded by the rpoC1 gene, is found in cyanobacteria and corresponds to the N-terminal region the beta' subunit, encoded by rpoC, in other bacteria. The equivalent subunit in plastids and chloroplasts is designated beta', while the product of the rpoC2 gene is designated beta''.
Links
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Statistics
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PSSM-Id: 131440
Aligned: 3 rows
Threshold Bit Score: 1270.67
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q7U8K3  11 HFDYVKITLASPERVMEWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGLFCEKIFGPSKDWECHCGKYKRVRHRGIVCE 90  Synechococcus sp. WH ...
Q7NDF8   7 RFDYIKISIASPERVMAWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGLFCERIFGPSKDWECYCGKYKRVRHRGIVCE 86  Gloeobacter violaceus...
P74177   8 RFDYVKIAIASPERIRQWGERTLPNGTVVGEVTKPETINYRTLKPEMDGLFCEKIFGPSKDWECWCGKYKRVRHRGIVCE 87  Synechocystis sp. PCC...

Q7U8K3  91 RCGVEVTESRVRRHRMGFIKLAAPVSHVWYLKGIPSYVAILLDMPLRDVEQIVYFNCYVVLDPGDHKELKYKQLLTEDEW 170 Synechococcus sp. WH ...
Q7NDF8  87 RCGVEVTESKVRRHRMGYIKLAAPVTHVWYLKGIPSYISTLLDMPLRDVEQVVYFNAYVVLNPGNAENLYYKQLLTEDQY 166 Gloeobacter violaceus...
P74177  88 RCGVEVTESRVRRHRMGYIKLAAPVTHVWYLKGIPSYLSILLDMALRDVEQIVYFNAYVVLNPGNASNLQYKQLLTEDQW 167 Synechocystis sp. PCC...

Q7U8K3 171 LEIEDEIYAEESEIENEP-VVGIGAEALKQLLEDLNLEEVAEQLREEINGSKGQKRAKLIKRLRVIDNFVATSARPEWMV 249 Synechococcus sp. WH ...
Q7NDF8 167 IEVEDQIFAEDSSLELPEgWAKMGAEAIHELLAAIEMESEAERLRADLGESKGQKRTKLIKRLRVLDNFIATGSRPEWMV 246 Gloeobacter violaceus...
P74177 168 VEIEDQIYAEDSELEGIE--VGIGAEAVQRLLAELQLEEVAEKLREEILASKGQKRAKLIKRLRVIDNFIATHSQAEWMT 245 Synechocystis sp. PCC...

Q7U8K3 250 LDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRMLQEAVDALIDNGRRGRTVVG 329 Synechococcus sp. WH ...
Q7NDF8 247 LTAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRMLQEAVDALIDNGRRGRTVVG 326 Gloeobacter violaceus...
P74177 246 LDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRMLQEAVDALIDNGRRGRTVVG 325 Synechocystis sp. PCC...

Q7U8K3 330 ANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQNIVNNIKAAK 409 Synechococcus sp. WH ...
Q7NDF8 327 ANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGLPKEMAIELFQPFVIHKLIQRGLVNNIKAAK 406 Gloeobacter violaceus...
P74177 326 ANNRALKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKIYQCGLPREMAIELFQPFVIHRLIKLGIVNNIKAAK 405 Synechocystis sp. PCC...

Q7U8K3 410 KLIQRADDEVMQVLQEVIDGHPIMLNRAPTLHRLGIQAFEPKLVDGRAIQLHPLVCPAFNADFDGDQMAVHVPLAIEAQT 489 Synechococcus sp. WH ...
Q7NDF8 407 KMIQRNDARIWSVLDEVITGHPVLLNRAPTLHRLGIQAFEPILVSGRAIQLHPLVCTAFNADFDGDQMAVHVPLSLESQA 486 Gloeobacter violaceus...
P74177 406 KLILKGDPQIWSVLEEVITGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSLEAQC 485 Synechocystis sp. PCC...

Q7U8K3 490 EARMLMLASNNILSPATGEPIVTPSQDMVLGSYYLTALQPGAEQpefgDRSRTYSSLEDVIHAFEDTRIGLHDWVWVR-F 568 Synechococcus sp. WH ...
Q7NDF8 487 EARLLMLASNNVLSPATGRPIITPTQDMVLGCYYLTVDNPDATK----GSGKYFGSSEDAVIAYNQGMIDLHAKIWLR-F 561 Gloeobacter violaceus...
P74177 486 EARLLMLACHNVLSPATGKPIVAPSQDMVLGCYYLTAENPNAQK----GAGRYFAGIEDALRAYDHGQVDLHSQIWIRhL 561 Synechocystis sp. PCC...

Q7U8K3 569 NGEVEDNDEldepiksETLsdgtrieqwtyrRDRFDEDGALISRYILTTTGRVVMNHTIIGAVAA 633 Synechococcus sp. WH 8102
Q7NDF8 562 EGEVETDNP-------EDL------------RVRRDEQGNALSQFVRTTVGRIIFNQVIQETLVA 607 Gloeobacter violaceus PCC 7421
P74177 562 DEDVVTEKPdteviktEDLgdgtvmkyyrerKIREGVDGEIITQYIQTTPGRIIYNKTIAEALVF 626 Synechocystis sp. PCC 6803 substr. K...
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