Conserved Protein Domain Family
swm_rep_I

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TIGR02059: swm_rep_I 
cyanobacterial long protein repeat
This domain appears in 29 copies in a large (>10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Statistics
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PSSM-Id: 131114
View PSSM: TIGR02059
Aligned: 5 rows
Threshold Bit Score: 80.3229
Threshold Setting Gi: 30180072
Created: 8-Oct-2014
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CAE07468      2032 ATAITNNS--TQTLSAPNPLfgstSTA-VASAG----NLLVLKFAGQLAdvTNDANTRNQFSVTTNG---VANTVTGISL 2101  Synechococc...
CAD84072       996 TLDGTNGF--MADLTPPALL----SAA-TSANG----SSLVLTYDEPLD--TTHPPATDDFVVNVDG---TPVTVSNVTV 1059  Nitrosomona...
CAE07468      1913 AISITNNS--TKDLTAGTVDfgssTTA-VATNG----ATIVLKFNEALAdiTNNANTRSQFAVLVNG---ATNNVTSISL 1982  Synechococc...
CAE07468       731 ATSVTNNS--TKDITGAVIDfgasTTA-VATNG----ATLVLTFPEELAdiSDGADVRAQFAVLTNG---AANAVTGVSL 800   Synechococc...
WP_010873164   930 lADATNTSfwVPDFTNSVQSagstSTApTSLLGsvisNLITIPFNQTLN--VNQIPNGGQFQVTVNGnstSPITVTSVTV 1007  Synechocyst...
CAE07468      2102 GGSntEITLTLTQVIEDNDEVTLSYTKDSVN 2132  Synechococcus sp. WH 8102
CAD84072      1060 NGS--TVTLELATPVNNGETVTLSYTDPTAG 1088  Nitrosomonas europaea ATCC 19718
CAE07468      1983 GDSntAITLTLATAVEDGDEVTVAYTKDTGN 2013  Synechococcus sp. WH 8102
CAE07468       801 GGSnkQVTLTLTNVVEDEDEVTVAYTANGAN 831   Synechococcus sp. WH 8102
WP_010873164  1008 ADT--SITLVLNQIIGQGQLVTITYTPNSNG 1036  Synechocystis sp. PCC 6803
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