1P85,3J3V,1VW4


Conserved Protein Domain Family
rplM_bact

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TIGR01066: rplM_bact 
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ribosomal protein L13, bacterial type
This model distinguishes ribosomal protein L13 of bacteria and organelles from its eukarytotic and archaeal counterparts. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Statistics
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PSSM-Id: 162186
View PSSM: TIGR01066
Aligned: 19 rows
Threshold Bit Score: 199.07
Threshold Setting Gi: 1350608
Created: 8-Oct-2014
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1P85_H   3 TFTAKPETVKRDWYVVDAT--GKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDK---VYYHH 77  Salmonella enterica s...
P47657   6 MLTKEEAIKNRKWYLVDAS--GLVLGKLAVKAANLIRGKNKANFTPNQDCGDHLIIINSDQVVLTGNKKDNE---FWYHH 80  Mycoplasma genitalium...
P75178   6 MLTKEQANKRRQWYIVDAA--GLVLGKLAVKAADLIRGKNKVDFTPNQDCGDYLIIINSDQVVLTGNKKENE---FWYHH 80  Mycoplasma pneumoniae...
P73294   5 VLPTIDN-LDHKWYVIDAE--GQRLGRLATEVATILRGKNKPTFTPHMDTGDFVIIINAEKIEVTGRKREQK---LYRRH 78  Synechocystis sp. PCC...
O06260   4 YAPK-AGDTTRSWYVIDAT--DVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHK---MVYRH 77  Mycobacterium tubercu...
O51314  10 IWIK-PKTVEKKWYVIDAA--DRILGKVAVDVVKILRGKHKAYYTPHQDLGDNVIIINASKVKLTGKKYQQK---LYYRH 83  Borrelia burgdorferi B31
O83988   4 IFVN-EREAVRAWHLIDAA--GRPLGRVAARVACLLRGKHKASYTPNQEMGDYVVVINAEKVFLSGTKPKDK---MYYRH 77  Treponema pallidum su...
Q9ZDU1   4 YSAK-PSEIEKKWWVIDAK--NVVLGRLASRVAIMLRGKHKPSFTPHLDCGDNIIIINAEHIKLTGKKLNPKdgkVYYRH 80  Rickettsia prowazekii...
P56038   3 KTAK-VNDIVRDWVVLDAK--DKVFGRLITEIAVLLRGKHRPFYTPNVDCGDFVVVINANKVKFSGMKLEDK---EYFTH 76  Helicobacter pylori 2...
Q12487   4 KIGHSGLAFARLWHHVDVArdKRTLGRLASAIAITLIGRHKPVYHPSQDCGDYVVVTNCQKIRVTGKKFEQK---TYWSH 80  Saccharomyces cerevis...
1P85_H  78 TGHIGGIKQATFEEMIA-RRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHN-HAAQQPQVLDI 142 Salmonella enterica subsp. enteric...
P47657  81 SQYMGGIKKTSGRDMIN-KNSDKLVFNAVKGMLPDNRLSRRLITKVHVFKNDKHN-MEAQKPTLLNW 145 Mycoplasma genitalium G37
P75178  81 SQYIGGIKKVSGRDMLK-KQSDKLVYNAVKGMLPDNRLSRRWITKVHVFKGDKHN-MEAQKPTTLNW 145 Mycoplasma pneumoniae M129
P73294  79 SGRPGGMKEETFEKLQV-RLPERIVESAVRGMLPKNSLGRKLFTKLKVYAGPSHP-HAAQQPETLVI 143 Synechocystis sp. PCC 6803 substr....
O06260  78 SGYPGGLHKRTIGELMQ-RHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHP-HSAQQPVPYEL 142 Mycobacterium tuberculosis
O51314  84 SRYPGGLYSDTFRTLSE-RKPCAPLEIAIKGMLPKGPLGRNLFRNLKVFSGSEHT-LKAQNPIKL-- 146 Borrelia burgdorferi B31
O83988  78 SGYPGGLKSVSFSALVK-RRPVEPLRHAVKGMLPKGPLGRKLIKNVKIYAGSVHP-HESQNPVPLSC 142 Treponema pallidum subsp. pallidum...
Q9ZDU1  81 TGFPGGIKDTTAGKILSgKYPERVIKMAVKRMITRNVLGAKQMSNLYVYANCEHP-HMAQQPTIYDF 146 Rickettsia prowazekii str. Madrid E
P56038  77 SGYFGSTKSKTLQEMLE-KAPEKLYHLAVRGMLPKTKLGKAMIKKLKVYRDDKHP-HTAQTSK-KDA 140 Helicobacter pylori 26695
Q12487  81 SGRPGQLKLQTMNKVVAdKGFGEILKKAVSGMLPKNKLRKQRLDRLKVFDGSENPyKQNITAFAHEQ 147 Saccharomyces cerevisiae S288c
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