3PCO


Conserved Protein Domain Family
pheS

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TIGR00468: pheS 
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phenylalanyl-tRNA synthetase, alpha subunit
Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment. [Protein synthesis, tRNA aminoacylation]
Statistics
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PSSM-Id: 273095
Aligned: 13 rows
Threshold Bit Score: 372.03
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3PCO_A        37 HLTLQMTTLRELPPEE--RPAAGAVINEAK------EQVQQALNARKAELE----SAALNARLAAETIDVSLPGRRIENG 104 Escherichia col...
Q57911       151 KIIDILKKRGYVDFDEe-KEIKIKLTEKGKefiknpIEIEEEITQLTRDII----ISGKWKKAYIRPYDVKVPTKPIYPA 225 Methanocaldococ...
O28324       146 TLKTLMKRK-LVTKSEt-KQVYIEVMKKPE------IELEDIITDLTPEML----LEGTWRGKQFLKYDITIPAKEIYGG 213 Archaeoglobus f...
O26837       171 ALKDLKGRKGIVDIRKi-KRHTIELTTEGRkllergIEIVEEATQVTHEHL----KSGAWRKLHYRGYNIDAEYPLVYPG 245 Methanothermoba...
P08312        37 HLTLQMTTLRELPPEE--RPAAGAVINEAK------EQVQQALNARKAELE----SAALNARLAAETIDVSLPGRRIENG 104 Escherichia col...
P43819        39 HFTQLMQELRNVSAEE--RPAMGAKINEAK------QAALEFLNAKKTEWE----QAELNSKLEKERVDVSLPGRKVETG 106 Haemophilus inf...
Q55187        42 ELSLILKGMGKLSAEE--RPKFGAIANEVK------EALQHDLESRKANLQ----NAAIEAQLAAETLDVTMAGSYRPQG 109 Synechocystis s...
P17921        38 PITEVLRGMGKLSAEE--RPKMGALANEVR------ERIANAIADKNEKLE----EEEMKQKLAGQTIDVTLPGNPVAVG 105 Bacillus subtil...
P56146        30 VFADKFNQLKHLNGEE--KNAFAKEIHHYK------QAFEKAFEWKKKAII----ELELEERLKKEKIDVSLFN-AIKTS 96  Helicobacter py...
P47436        35 DLKPLLQKIKTATKLSe-KSSLGKLYQSLD------IQLTDLLTSYKKTFE----INNQVSQKP--SLDVMLPATEFTNG 101 Mycoplasma geni...
P75564        35 DLKPLLSQIKETTDIEt-KRHLGQLYKQLE------STLQTLHDTQLQVFT----QAQSSSVLT--HGDVMLLATSFAPG 101 Mycoplasma pneu...
WP_023003294 183 KKKGADSVFFKIIEKLdlKFRLSSFGLEVKnflmksKLTGDELTKLTPEIL----KNKTYENKKFRAYNIHIPSAKTFIG 258 Lyme disease sp...
BAA09216     151 LDSIDAKILNDLKKRKliAQGKITDFNVTKg-----PEFSTDLTKLETDLTsdmvSTNAYKDLKFKPYNFNSQGVQISSG 225 baker's yeast
3PCO_A       105 GLHPVTRTIDRIESFFGELGFTVATGPE-IEDDYHNFDALNIPGHHPARADHDTFWFDT--------------------- 162 Escherichia col...
Q57911       226 KVHPLTRIIREVKEILLAMGFKEVKSPI-VETEFWNFDMLFEPQDHPAREMQDTFFLKYpnegdipedllskvke----- 299 Methanocaldococ...
O28324       214 KIHPYERIIEECRKVFLEMGFTEIKGHY-VQPAFWNFDALFQPQDHPARDMQDTFYLDRyidlegeivervkatheng-- 290 Archaeoglobus f...
O26837       246 KMHPLRRIIDEIRSIFLKLGFTESRGPI-VESAFWNFDCLFQPQDHAAREMQDTFYVKNpavtdlpcedlvravqdahet 324 Methanothermoba...
P08312       105 GLHPVTRTIDRIESFFGELGFTVATGPE-IEDDYHNFDALNIPGHHPARADHDTFWFDT--------------------- 162 Escherichia col...
P43819       107 GLHPVTMTINRVTKFFSELGFSVENGPE-IESDYYNFDALNIPKHHPARADHDTFWFNP--------------------- 164 Haemophilus inf...
Q55187       110 RRHPLNSTVDRVLDIFVGLGYTVATGPQ-VETDYYNFEALNIPADHPARDMQDTFFLKD--------------------- 167 Synechocystis s...
P17921       106 GRHPLTVVIEEIEDLFIGMGYTVEEGPE-VETDYYNFESLNLPKEHPARDMQDSFYITE--------------------- 163 Bacillus subtil...
P56146        97 SSHPLNYTKNKIIEFFTPLGYKLEIGSL-VEDDFHNFSALNLPPYHPARDMQDTFYFKD--------------------- 154 Helicobacter py...
P47436       102 SNNALYQVIDNLVEYFKSFLFTINFDSE-LTSISDCFDLLNIPKDHSSRNESDSFYIDK--------------------- 159 Mycoplasma geni...
P75564       102 SSNIIYQVIDELVNYFKKFLFTVNYDSE-LTTIADCFDLLNIPKDHPSRNLTDTFYLDK--------------------- 159 Mycoplasma pneu...
WP_023003294 259 RANSYLDYISKIKDKLVGLGFQEFDGPL-VETEFFNNDALFMPQFHPSRDIKDVYYISDpsmqeslpepyfsnvklahet 337 Lyme disease sp...
BAA09216     226 ALHPLNKVREEFRQIFFSMGFTEMPSNQyVETGFWNFDALYVPQQHPARDLQDTFYIKDpltadlpddktymdnikavhe 305 baker's yeast
3PCO_A       163 -------------------TRLLRTQTSG---VQIRTMKAQQ----PPIRIIAPGRVYRND-YDQTHTPMFHQMEGLIVD 215 Escherichia col...
Q57911       300 ---vhercwkykfdenvsrRLILRTHTTAssiRYLASLSDEEk--nKPHKVFCIDRVFRNEaIDYKHLPEFYQCEGIIMD 374 Methanocaldococ...
O28324       291 -witgstgwggewslekarQLVLRTHTTA---ITIHYLAENPe---PPQKAFCIDRVYRREtIDATHLPEFDQLEGVVLD 363 Archaeoglobus f...
O26837       325 ggstgsegwqyewdrdvarQSVLRTHTTC---VSARFLSENe----PPLKMFSVGRVFRREtITYKHLPEFHQVEGIVAG 397 Methanothermoba...
P08312       163 -------------------TRLLRTQTSG---VQIRTMKAQQ----PPIRIIAPGRVYRND-YDQTHTPMFHQMEGLIVD 215 Escherichia col...
P43819       165 -------------------ELLLRTQTSG---VQIRTMEKMQ----PPIRIMAPGRVYRND-YDQTHTPMFHQIELLYVD 217 Haemophilus inf...
Q55187       168 -------------------GRLLRTHTSP---VQIRYMEKHD----PPIRIVAPGRVYRRDtVDATHSAVFHQVELLAID 221 Synechocystis s...
P17921       164 -------------------ETLMRTQTSP---VQTRTMEKHEg--kGPVKIICPGKVYRRDnDDATHSHQFMQIEGLVVD 219 Bacillus subtil...
P56146       155 -------------------HKLLRTHTSP---VQIHTMQEQT----PPIKMICLGETFRRD-YDLTHTPMFHQIEGLVVD 207 Helicobacter py...
P47436       160 -------------------TSLLRTHCTA---TTLKAVRTSKktnnPDIRVVSLGAVFRNDsDDATHSHQFTQLDFMWIK 217 Mycoplasma geni...
P75564       160 -------------------NRLLRTHCTA---ATLRAVKETKksnnPDIRIASFGAVFRKDdDDATHSHQFNQLDFMWIK 217 Mycoplasma pneu...
WP_023003294 338 gyatgsrgwrysfsedlskRLVLRTHGTV-----LSAKQLINak-nP-SRYFGVIRCFRYDqVDATHGVDFYQTEGIVIE 410 Lyme disease sp...
BAA09216     306 qgrfgsigyrynwkpeecqKLVLRTHSTAisaRMLHDLAKDP----KPTRLFSIDRVFRNEaVDATHLAEFHQVEGVLAD 381 baker's yeast
3PCO_A       216 T--NISFTNLKGTLHDFLRNFFEedlQIRFRPSYFPFTEPSAEVDVMGkN--GK---------WLEVLGCGMVHPNVLRN 282 Escherichia col...
Q57911       375 D--NVNFNNLIGVLKEFLNRLGFe--KVRFRPAYFPFTEPSLEAEVYL-E--GKg--------WLEILGAGIFRPEVLEP 439 Methanocaldococ...
O28324       364 R--DVGFKHLLGLLKEFFTKMGFe--DVRFRPGYFPYTEPSVEPEVYV-E--GLg--------WVELGGAGVFRKEVTEP 428 Archaeoglobus f...
O26837       398 D--EVNFRNLLGILREFYRKLGFe---VRFRPAYFPYTYLSTECEIYLpE--KKs--------WIELGGAGMFRPEVLEP 462 Methanothermoba...
P08312       216 T--NISFTNLKGTLHDFLRNFFEedlQIRFRPSYFPFTEPSAEVDVMGkN--GK---------WLEVLGCGMVHPNVLRN 282 Escherichia col...
P43819       218 K--KANFTELKGLLHDFLRAFFEedlQVRFRPSYFPFTEPSAEVDVMGkN--GK---------WLEVLGCGMVHPNVLRN 284 Haemophilus inf...
Q55187       222 K--GLAFTHLKGTIQAFIKQMFGealPIRFRASYFPFTEPSAEVDVQW-Q--GK---------WLEVMGCGMVDPNVMEA 287 Synechocystis s...
P17921       220 K--NISMSDLKGTLELVAKKMFGqdrEIRLRPSFFPFTEPSVEVDVTCfKcgGNgcsvckgtgWIEILGAGMVHPNVLKM 297 Bacillus subtil...
P56146       208 QkgNIRFTHLKGVIEDFLHYFFGg-vKLRWRSSFFPFTEPSAEVDISCvFckQEgcrvcshtgWLEVLGCGMVNNAVFEA 286 Helicobacter py...
P47436       218 K--GLSLANLKWFINNMITHFFGentFTRFRLSHFPFTEPSFEIDIRCwLc-QNgcsickqtkWIEILGAGIIHPQVMNN 294 Mycoplasma geni...
P75564       218 K--DFSLTNLKWFMQNMINHIFGentSARFRLSHFPFTEPSFEIDIRCwLc-QNgcgvckktrWIEVLGAGILHPQVMAN 294 Mycoplasma pneu...
WP_023003294 411 D--GVSIKTLLGLLEIFAKELAGa-tEIKYVPAYFPFTEPSIEIHVKHp---VLg--------WFELGGSGIFRPEVTKP 476 Lyme disease sp...
BAA09216     382 Y--NITLGDLIKFMEEFFERMGVt--GLRFKPTYNPYTEPSMEIFSWH-E--GLq-------kWVEIGNSGMFRPEMLES 447 baker's yeast
3PCO_A       283 VGIDPev-ySGFAFGMGMERLTMLRYGVTDLRSFFENDLR--FLKQF 326 Escherichia coli BW2952
Q57911       440 IGIEK----PVLAWGIGFSRLAMLRYGLTDIRDLHKNDLD--WLKRV 480 Methanocaldococcus jannaschii DSM 2661
O28324       429 LGIRG----KVLAWGLGIGRLAMLKIGLKDLRRLYLPDLG--WLRSM 469 Archaeoglobus fulgidus DSM 4304
O26837       463 LGVET----PVAAFGLGIERLAMIRFDIKDIRMLYQSDLG--WLRGL 503 Methanothermobacter thermautotrophicus str. Delta H
P08312       283 VGIDPev-ySGFAFGMGMERLTMLRYGVTDLRSFFENDLR--FLKQF 326 Escherichia coli K-12
P43819       285 VGIDPne-ySGFAVGMGVERLTMLRYNVTDLRSFFENDLR--FLKQF 328 Haemophilus influenzae Rd KW20
Q55187       288 VGYDPev-yTGFAAGFGVERFAMVLHQIDDIRRLYNSDLR--FLRQF 331 Synechocystis sp. PCC 6803 substr. Kazusa
P17921       298 AGFDPke-yQGFAFGMGVERIAMLKYGIDDIRHFYTNDVR--FISQF 341 Bacillus subtilis subsp. subtilis str. 168
P56146       287 IGYENv---SGFAFGMGIERLAMLTCQINDLRSFFETDLR--VLESF 328 Helicobacter pylori 26695
P47436       295 MGIGDteniTGIAAGIGIERLAMLKYGIDDIRDFYDNNFK--FLTQF 339 Mycoplasma genitalium G37
P75564       295 MGFSDtdniRGIAAGIGIERLVMLKHGISDIRDLYDNNFK--FLAQF 339 Mycoplasma pneumoniae M129
WP_023003294 477 LGIDL----PVIAWGIGIDRMALMHLGLNDLRDLFTYDIGdvILRRG 519 Lyme disease spirochete
BAA09216     448 MGLPKd--lRVLGWGLSLERPTMIKYKVQNIRELLGHKVSldFIETN 492 baker's yeast
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