1M4X


Conserved Protein Domain Family
Capsid_N

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pfam16903: Capsid_N 
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Major capsid protein N-terminus
This is the N-terminal domain of the major capsid protein in several dsDNA viruses.
Statistics
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PSSM-Id: 407137
Aligned: 8 rows
Threshold Bit Score: 217.348
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1M4X_A     1 TFFKTVYRRYTNFAIESIQQ-TINGSVGFGNKVSTQISRNGDLITDIVVEFVLTKGGNGGTTyy-----pAE-------- 66  Paramecium bursaria...
Q197E6    37 TYFVREFKKSTWFTQVPVPLsRSTGTSDFGQNWSVSISRAGDYLLQTWLRVTIPQVTLAATA--------TPatlslrwt 108 Invertebrate irides...
Q89345    25 TIFKSYVKKVNNFAIDSVKI---PINGMGNGNPSVLIPRNGDLIKSIRLEITLKK----GTGqsf---ypAE-------- 86  Paramecium bursaria...
Q89346    26 SVWRNVTKKVSNFAMESIEN---YINVNPGSTTSIVVGRFGDLVRKVTLEITMKK----GSTtnp--fypSE-------- 88  Paramecium bursaria...
O41040    24 SLWKRIMARKTNFAIESIET---VFDVLYGSTSFINIKKAGDLLKSCVLEITMKR----TSTesf---ypAE-------- 85  Paramecium bursaria...
Q5UQL7    25 TFFKVVYRRHTNFAVESIEQ-FFGGNLGFGKKSSAEINRSGDLITQVFLKVTLPEVRYCGDFtnf---ghVEfawvr--- 97  Acanthamoeba polyph...
Q8QNG3     2 TLFKSQHKRYTNFAEDFEENdFSAGTVGFGQRVSANVSRYGDLVSDVLLEVTLPAIQASESVvngagtevADadkaaywv 81  Ectocarpus siliculo...
AGE51527 118 SLFKRKYKRYTNFAIENFEE-RFSTVVKFGTRNICQLSKNGDLIGNMCFRVTLPNLGIPGGTwapt-------------- 182 Paramecium bursaria...
1M4X_A    67 -----ELLQDVELEIGGQRIDKH--YndWFRTYDALFRMNDDRYNYR------------RMT--------------DWVN 113 Paramecium bursaria...
Q197E6   109 rnlmhNLIREITISFNDLVGSRLdnY--FLDMWSAFTTPASKRNGYD------------NMIgnistltdpvgpggSLGH 174 Invertebrate irides...
Q89345    87 -----QLISYLALKYGGNIIQKIddFsnFCRIRNELFMDPDERHTDY------------RVN--------------NFSS 135 Paramecium bursaria...
Q89346    89 -----QYVKYAHLSIGGQIVYRIddFptWTRVHEELFMDPDTRATNQ------------RVN--------------NFRP 137 Paramecium bursaria...
O41040    86 -----QFIKSLTLLIGDQEVEKIqdFptWSRVHDELFNDTEMRSANY------------RML--------------NFRP 134 Paramecium bursaria...
Q5UQL7    98 -nighAIVEETELEIGGSPIDKH--YgdWLQIWQDVSSSKDHEKGLA------------KMLgdvpeltsistlswDVPD 162 Acanthamoeba polyph...
Q8QNG3    82 naigyAIISEVEIEIGGTEVDTL--YseWMFLWEELTQRPGARLGEQigkfaysadveeDMI------------------ 141 Ectocarpus siliculo...
AGE51527 183 --mgyNIFSTIRMRIGDTIVQSHdrV--WYDIDDKMFCDSTKIQGLD------------ELI--------------KRNV 232 Paramecium bursaria...
1M4X_A   114 NELVgaqkRFYVPLIFFFNQ---TPGLALPLIALQYHEVKLYFTL------------------------ASQVQGVNyng 166 Paramecium bursaria...
Q197E6   175 TGGT----VLNLPISLFFTR---DTGVSLPTAALPYNEIQLNFSMrdwkdlli--------ltdtaittGNPYQTIDvsk 239 Invertebrate irides...
Q89345   136 SDVVgsvkYFFLDLPLFFSK---DTSVALPLIALQYHDIELDFRFn----------------------dVSTIQGVD--- 187 Paramecium bursaria...
Q89346   138 EDPVgairKFYLDIPLFFTD---DASKALPLIALQYHEVKLDVLFa----------------------sPGDIPGID--- 189 Paramecium bursaria...
O41040   135 DDPPgairTFYLDLPLFFTR---YLSNSLPLVALQYHEVKLKIDFe----------------------pPYNIPGID--- 186 Paramecium bursaria...
Q5UQL7   163 NTVLkpsyTLYVPLQFYFNR---NNGLALPLIALQYHQVRIYVKFrqadqcyi--------asdafksgCGNLQLDD--- 228 Acanthamoeba polyph...
Q8QNG3   142 -EFAsqerKLYVPLPFWFNKywmEHGLSIPLIALTYHEIKIKVSFrpladccavvyresdptwgdywalAADKIPINtas 220 Ectocarpus siliculo...
AGE51527 233 TLTTdqewELIIPLKFFCCKrntGKQQFLPILNMDTN-INVYLEFnllplnsl--------vtlptgsiLPDIQSID--- 300 Paramecium bursaria...
1M4X_A   167 ssaiaGAAQPTMSVWVDY 184 Paramecium bursaria Chlorella virus 1
Q197E6   240 hlggvAPSLSNVQVWANY 257 Invertebrate iridescent virus 3
Q89345   188 -----ASYTPTIEMYIDY 200 Paramecium bursaria Chlorella virus 1
Q89346   190 -----ASYTPTVECYIDY 202 Paramecium bursaria Chlorella virus 1
O41040   187 -----STYMPQVRFYGDY 199 Paramecium bursaria Chlorella virus 1
Q5UQL7   229 -----------VSLYVNY 235 Acanthamoeba polyphaga mimivirus
Q8QNG3   221 asamaASDMD-ARLLVSY 237 Ectocarpus siliculosus virus 1
AGE51527 301 -----------ASVWVDY 307 Paramecium bursaria Chlorella virus CviKI
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