4KOP


Conserved Protein Domain Family
Whirly

?
pfam08536: Whirly 
Click on image for an interactive view with Cn3D
Whirly transcription factor
This family contains the plant whirly transcription factors.
Statistics
?
PSSM-Id: 400719
Aligned: 22 rows
Threshold Bit Score: 148.982
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
4KOP_B           17 IFKGKAALSVEPVLPSFTEIDSGNLrIDRRGSLMMTFM-----------P---AIGERK--YDWEKKQK-FALSPTEVGS 79   thale cress
ERM99737         71 IFKGKAALKMDPIGPKFSKLNPDSMrIERRGCVLLTFF-----------P---AIGVRK--YDWQKRQI-FALSATEVGS 133 
XP_009406472     55 LYKGKAALSVSPVLPTFREVDSGVSrVYKKGCVILTFW-----------P---AVGVRK--YDWQKKQA-FALSPTEVGS 117 
EFJ52446       3596 IYKTRAAMAVRLLPPSFTTENGYKT-LERDGVMLLEFAnanpgqpsgtaP---AAGGINrtYNWSNKIS-FALSPSELGT 3670
EFJ33294         38 fYKGKCALNMRLIKPTFKISDSGDAiLSREGTVMLEFA-----------P---SISQRQ--YDWGKKQVlFALSVSELGQ 101 
jgi:OSTLU_8400    6 VYKTKGALKLKAVRATFESDASGRRiMKRAGGVLLELA-----------N---ATAPRQ--YDWGNKGS-FMLSATEAAE 68  
Q00TP9           87 VYKTRGAMKMKAVRPTLGALGENAV-VRRPGGVLLELA-----------N---ATAPRT--YDWQNKGS-FMLSGTEAAE 148  Ostreococcu...
XP_003063954    146 IHKSKTAVQMSAIKPTFELLPNGSKqKKRDGAMFLEFA-----------PvaaGAGQKQ--YDWSRKQS-ISLSPLEFME 211 
XP_002508883    189 VYKSKAAAKFQVIKPTFEVKPDGSRaKKRDGGVLLEMA-----------P---AVGPRQ--YDWAQKQT-IMLSPLELVE 251 
XP_001701785     80 VYKTRAAMCLRLLPPTFAKAQAGKV-LERDGTMLLEFAtanaaapgagsG---PAGNVNrtYNWGNKVT-FALSPVELGN 154 
4KOP_B           80 LI---SMGSKDSSEFFHDPS-MKSSnaGQVRKSLSVKPHADGs-GYFISLSVnns----ilkTNDYFVVPVTKAEFAVMK 150  thale cress
ERM99737        134 VI---SLGPTDSCEFFHDPS-LKKSdeGQVRKSLHIAPNSDNs-GHFFNLQVtna----iqkTMDRLSVPVAKAELSVMQ 204 
XP_009406472    118 LI---GLGPAESCEFFHDPS-MKSSleGQVKKSLSISPMKDKt-GILLNFSVvnn----iqkTNERFSVPVTKAEFTAIR 188 
EFJ52446       3671 MLagdAIASDKGLVMYHDPTkLGKV--GEPMKRLTMKQMPDG--AISFSLSA----------APDNISLPVSRGEFEVLK 3736
EFJ33294        102 IL---ALTPSESLEFFHDPN-MGKSdaGMVRKSLKIEPTTDRn-GFFFGLTVank----vekAEARLNIPISKGEFAIIR 172 
jgi:OSTLU_8400   69 LAd--RMASNAPCSFFHDPG-AGGAnrGNVNKAFKVEPMPDGsgGLFVNLQTts------ggNKSFVSVPVSYGESAALR 139 
Q00TP9          149 LAd--RMAANGSCSFFHDSAkANGGggGTLGKAFKVEPMPDGsgGMFVNLTVtls----enrGQQRFSVPVSYGESAAIR 222  Ostreococcu...
XP_003063954    212 LSe--ALAANRGVNFFHDPW-MGTSrqGETTKSLKAEPMPDGsgGIFLNLTVasg-----ggRVEKLNIAVSFQEFAVFR 283 
XP_002508883    252 LTe--SLHFGRGVNFFHDPG-MGTNrqGAMTKSLKAEPMPDGsgGIFLNMGVttggdganggQRVNMNIAVSFAEFAALR 328 
XP_001701785    155 ILagdAVASDKGLVLWHDPAkLGKT--GEPIKKLSLKQLPDG--NISFNLTA----------GPENFSVPVTKGEFEVIK 220 
4KOP_B          151 TA 152  thale cress
ERM99737        205 SA 206 
XP_009406472    189 TV 190 
EFJ52446       3737 SL 3738
EFJ33294        173 SA 174 
jgi:OSTLU_8400  140 HI 141 
Q00TP9          223 QL 224  Ostreococcus tauri
XP_003063954    284 EL 285 
XP_002508883    329 HL 330 
XP_001701785    221 SV 222 
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap