4KOP


Conserved Protein Domain Family
Whirly

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pfam08536: Whirly 
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Whirly transcription factor
This family contains the plant whirly transcription factors.
Statistics
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PSSM-Id: 400719
View PSSM: pfam08536
Aligned: 22 rows
Threshold Bit Score: 148.982
Threshold Setting Gi: 159487549
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4KOP_B           17 IFKGKAALSVEPVLPSFTEIDSGNLrIDRRGSLMMTFM-----------P---AIGERK--YDWEKKQK-FALSPTEVGS 79   thale cress
ERM99737         71 IFKGKAALKMDPIGPKFSKLNPDSMrIERRGCVLLTFF-----------P---AIGVRK--YDWQKRQI-FALSATEVGS 133  Amborella t...
XP_009406472     55 LYKGKAALSVSPVLPTFREVDSGVSrVYKKGCVILTFW-----------P---AVGVRK--YDWQKKQA-FALSPTEVGS 117  wild Malays...
EFJ52446       3596 IYKTRAAMAVRLLPPSFTTENGYKT-LERDGVMLLEFAnanpgqpsgtaP---AAGGINrtYNWSNKIS-FALSPSELGT 3670 Volvox cart...
EFJ33294         38 fYKGKCALNMRLIKPTFKISDSGDAiLSREGTVMLEFA-----------P---SISQRQ--YDWGKKQVlFALSVSELGQ 101  Selaginella...
jgi:OSTLU_8400    6 VYKTKGALKLKAVRATFESDASGRRiMKRAGGVLLELA-----------N---ATAPRQ--YDWGNKGS-FMLSATEAAE 68   Ostreococcu...
Q00TP9           87 VYKTRGAMKMKAVRPTLGALGENAV-VRRPGGVLLELA-----------N---ATAPRT--YDWQNKGS-FMLSGTEAAE 148  Ostreococcu...
XP_003063954    146 IHKSKTAVQMSAIKPTFELLPNGSKqKKRDGAMFLEFA-----------PvaaGAGQKQ--YDWSRKQS-ISLSPLEFME 211  Micromonas ...
XP_002508883    189 VYKSKAAAKFQVIKPTFEVKPDGSRaKKRDGGVLLEMA-----------P---AVGPRQ--YDWAQKQT-IMLSPLELVE 251  Micromonas ...
XP_001701785     80 VYKTRAAMCLRLLPPTFAKAQAGKV-LERDGTMLLEFAtanaaapgagsG---PAGNVNrtYNWGNKVT-FALSPVELGN 154  Chlamydomon...
4KOP_B           80 LI---SMGSKDSSEFFHDPS-MKSSnaGQVRKSLSVKPHADGs-GYFISLSVnns----ilkTNDYFVVPVTKAEFAVMK 150  thale cress
ERM99737        134 VI---SLGPTDSCEFFHDPS-LKKSdeGQVRKSLHIAPNSDNs-GHFFNLQVtna----iqkTMDRLSVPVAKAELSVMQ 204  Amborella t...
XP_009406472    118 LI---GLGPAESCEFFHDPS-MKSSleGQVKKSLSISPMKDKt-GILLNFSVvnn----iqkTNERFSVPVTKAEFTAIR 188  wild Malays...
EFJ52446       3671 MLagdAIASDKGLVMYHDPTkLGKV--GEPMKRLTMKQMPDG--AISFSLSA----------APDNISLPVSRGEFEVLK 3736 Volvox cart...
EFJ33294        102 IL---ALTPSESLEFFHDPN-MGKSdaGMVRKSLKIEPTTDRn-GFFFGLTVank----vekAEARLNIPISKGEFAIIR 172  Selaginella...
jgi:OSTLU_8400   69 LAd--RMASNAPCSFFHDPG-AGGAnrGNVNKAFKVEPMPDGsgGLFVNLQTts------ggNKSFVSVPVSYGESAALR 139  Ostreococcu...
Q00TP9          149 LAd--RMAANGSCSFFHDSAkANGGggGTLGKAFKVEPMPDGsgGMFVNLTVtls----enrGQQRFSVPVSYGESAAIR 222  Ostreococcu...
XP_003063954    212 LSe--ALAANRGVNFFHDPW-MGTSrqGETTKSLKAEPMPDGsgGIFLNLTVasg-----ggRVEKLNIAVSFQEFAVFR 283  Micromonas ...
XP_002508883    252 LTe--SLHFGRGVNFFHDPG-MGTNrqGAMTKSLKAEPMPDGsgGIFLNMGVttggdganggQRVNMNIAVSFAEFAALR 328  Micromonas ...
XP_001701785    155 ILagdAVASDKGLVLWHDPAkLGKT--GEPIKKLSLKQLPDG--NISFNLTA----------GPENFSVPVTKGEFEVIK 220  Chlamydomon...
4KOP_B          151 TA 152  thale cress
ERM99737        205 SA 206  Amborella trichopoda
XP_009406472    189 TV 190  wild Malaysian banana
EFJ52446       3737 SL 3738 Volvox carteri f. nagariensis
EFJ33294        173 SA 174  Selaginella moellendorffii
jgi:OSTLU_8400  140 HI 141  Ostreococcus lucimarinus CCE9901
Q00TP9          223 QL 224  Ostreococcus tauri
XP_003063954    284 EL 285  Micromonas pusilla CCMP1545
XP_002508883    329 HL 330  Micromonas commoda
XP_001701785    221 SV 222  Chlamydomonas reinhardtii
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