Conserved Protein Domain Family
YihI

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pfam04220: YihI 
Der GTPase activator (YihI)
YihI activates the GTPase activity of Der, a 50S ribosomal subunit stability factor. The stimulation is specific to Der as YihI does not stimulate the GTPase activity of Era or ObgE. The interaction of YihI with Der requires only the C-terminal 78 amino acids of YihI. A yihI deletion mutant is viable and shows a shorter lag period, but the same post-lag growth rate as a wild-type strain. yihI is expressed during the lag period. Overexpression of yihI inhibits cell growth and biogenesis of the 50S ribosomal subunit. YihI is an unusual, highly hydrophilic protein with an uneven distribution of charged residues, resulting in an N-terminal region with high pI and a C-terminal region with low pI.
Statistics
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PSSM-Id: 427795
Aligned: 26 rows
Threshold Bit Score: 136.663
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q6DB75         13 EKSKVKRKTREELEREARERKRDKKHRGHSAGSRTQEKaSTDQ-NS-GQRKVADPRIGSKKPVQLGVLDSAIVKPKPKSK 90  Pectobacterium...
Q7VKZ7         28 SNSKKRKPTRYELDVQAREEKKKRKHKGLPTGSRNVI--TEQK-TA-SAKVKKDPRVGSRKKVPLMVEFVNKPEKGQMIK 103 [Haemophilus] ...
jgi:Tola_0437  13 KRPDNKKKKPAFSAQEAREQKKQAKRKGLRPGARNSAE-TQEQ-KN-QSVKNKDARVGSRKPVALVAEAPVAVVKAPKPA 89 
WP_011768635   15 AKFDGQRKESSAQSQVSRENKRQSKLKGNKAGARNAIE-SKQQ-QN-TKKGINDHRIGSQKAVPLTVAKEVPADIAKVAP 91  Psychromonas i...
jgi:Sama_0089  17 QAPRTPKSERVPTS--------KKRDTGNKSGSRQNPGtEKQG-NR-SGKGKQDPRLGSKKPVALELAPQTQPQVKAPKP 86 
BAJ00055       17 LAPRTKKSDRGLEG--------KKKKSGNKAGSRHNANmVGGS-DG-STSSRKDPRHGSKKAIKLDLPSQVQVIAPKKD- 85 
Q8E8D7         17 QQPRVKKQDRAEVTG-------KRAEKGNKSGSRHNEAlIQAQaPQkKAAQKKDPRHGSKKPVALALPTTTEKSATPKV- 88  Shewanella one...
Q07W42         17 FAPRVKKVDRNAVDG-------KKSETGRKSGSRHNETlLKQAsGN-TSVKSKDVRHGSKKPVALTLPTTVTAPLVVKP- 87  Shewanella fri...
Q9KVM7         15 NDQLVVVRTRSESELESRLRKKLKKRKGLKSGSRHSEG-SESQ-VR-QAAQKRDPRLGSKKPIPLIVAEPKKLNK----- 86  Vibrio cholera...
Q5E8S3         14 SQPVVVTRNRTDRDVESREIKRKRKRKGLKAGARNAES-NAEQ-AR-RNAQKKDPRIGSKKPIQLVVEAKQKTTK----- 85  Aliivibrio fis...
Q6DB75         91 PSEpvek-----vvaAKP-TMSPEE-------ELAMLENDTRLDALLDRLDSGETLSAKDQSWVDETLDRIDILMEELGI 157 Pectobacterium...
Q7VKZ7        104 PVPlep------snhATKaTVSPEV-------ELTQLENNECLNQLLDQLEAGKVLSTQDQQFVDECLDRVHELIIELGI 170 [Haemophilus] ...
jgi:Tola_0437  90 APK-------------AEpQMPPEQqlakwerELEKLENDDRLNALLDKLELEQPISEEDQEWLDKKLARHQELLKLLGL 156
WP_011768635   92 QPKtkvvkipaevkpSPEaKQAPEQ-------EIVEIENDQRLNELLEQLDNGEKISKTDQSWIDKQMLRHQQLMKELGW 164 Psychromonas i...
jgi:Sama_0089  87 ----------------KQpKLSDEQ-------LLLKLEEDPRLNELLDRLEEGRVLGAEDQRWLDEQLSKIEALMEKLGI 143
BAJ00055       86 ----------------QGpKLTDEQ-------KLFKLEEDPRLNQLLDMLEEGKELGQDDQKWLNKTLNQIEALMDRLGI 142
Q8E8D7         89 ----------------KQpKLTDEQ-------KLLKLEEDPRLNQLLDMLEEGRNLSDADQKWLDQQLNKIEALMIKLGI 145 Shewanella one...
Q07W42         88 ----------------KQpKLTDEQ-------KLLKLEDDPRLNQLLDQLEEGRDLSDTDQKWLNVQLDKIEQLMLSLGL 144 Shewanella fri...
Q9KVM7         87 ----------------QErKLAAEQ-------ELAMLEKDAQLNVLLDRLDNGEKLGIGLQKYVDEKLDRIEVLMEQLGL 143 Vibrio cholera...
Q5E8S3         86 ----------------QErRLTNEQ-------ELAMLENDAQLMVLLDRLDSGENLGTGLQKYVDEKLARIEHLMGRLGL 142 Aliivibrio fis...
Q6DB75        158 ElG--DDDEEE-------------QQEDMLQLL 175 Pectobacterium atrosepticum SCRI1043
Q7VKZ7        171 E-D--DEENNE-------------DL--LLRQF 185 [Haemophilus] ducreyi 35000HP
jgi:Tola_0437 157 N-E--EEKVAS-------------DPDELLQRF 173
WP_011768635  165 L-D--DEGEED-----------------LLQQF 177 Psychromonas ingrahamii
jgi:Sama_0089 144 T-DidEAQGEDs-----------dDDDALLARF 164
BAJ00055      143 T-E--EEDLGQivqs-----tptvSDDDLLDKF 167
Q8E8D7        146 S-DelEDEAPAksk--------adSDDDLFDRF 169 Shewanella oneidensis MR-1
Q07W42        145 T-E--GDDTPTqspk------kqlSDDELLNRF 168 Shewanella frigidimarina NCIMB 400
Q9KVM7        144 L----DDEPEPapapqskptkkrkTEDDLLSEF 172 Vibrio cholerae O1 biovar El Tor str. N16961
Q5E8S3        143 L-D--DEEPEEieefpefaerkakSDDDLLAEF 172 Aliivibrio fischeri ES114
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