3HKZ,1EIK,6KF3


Conserved Protein Domain Family
RNA_pol_Rpb5_C

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pfam01191: RNA_pol_Rpb5_C 
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RNA polymerase Rpb5, C-terminal domain
The assembly domain of Rpb5. The archaeal equivalent to this domain is subunit H. Subunit H lacks the N-terminal domain.
Statistics
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PSSM-Id: 426111
Aligned: 142 rows
Threshold Bit Score: 67.0724
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3HKZ_T             9 IDPRIHYLVPKHEVLNIDEAYKI-----LKELG----IRPEQLPWIRASDPVARSINAKPGDIIRIIRK-SQLYGE-VVS 77  Saccharolob...
Q4A325           135 YNITKHILVKPHTYIDKEQADVI-----INSFA----AKPEHFPMMLSTDPMAVFCHYKIGDLIEIDRSsLGGVTEgGIT 205 Emiliania h...
Q5UPX7           132 ADLLSNEFQPRFQLLSPSEMESV-----KTEYN----ANPYTLKKIVRSDPIVRYFALKKNDIIRIIRP-SATSGQ-GID 200 Acanthamoeb...
Q91F72           106 MNITKYHLQPLFNKLLDEEAKDFkkkyiKCKIEngkkIILQSFPSMSKSDPIARFFKYQSGDVIKITNKdG------FVS 179 Invertebrat...
CBRAS:FFONT_0603   6 FSVQDHVLVPKHERIPITEVPKV-----LKELN----VSINQLPLIRSSDPVAREIGAKPGELVKITRR-DEITGE-SVV 74 
jgi:Arcve_1355     4 FRLQDHVLVPKHEVLSKEEAEEL-----LKTLG----VKPEQLPKIRVDDPVAKEIGAKVGDIVRIIRE-SPTAGK-TVA 72 
CGB:Asulf_00705    4 ISLQDHILVPKHEVLSKEEAEKI-----LKILN----IEKEQLPKIKVTDPIAQEIGAKVGDIVRVERE-SPTAGK-SIA 72 
Q65181           128 INIPKVSAIPKHKLITQEEAQEF-----LGREY----LQPQDLMQISASDPPVVWLGGRPGDFVQIERP-SETAMH-AVV 196 African swi...
Q388R6           226 YNISRHQSVPKHVPMTDVEVRAF-----LEQRK----LMITQLPRILNDDPMVEYLDLPRGSIIRIERR-TDEGST-YEM 294 Trypanosoma...
Q4DY18           209 YNIARHETVPQHEVLSPEEAQLF-----LQQRQ----ISLSQLPRILKEDPMVAYLGLARGSIVKIHRD-TKESGP-YEM 277 Trypanosoma...
3HKZ_T            78 YRYV 81  Saccharolobus solfataricus P2
Q4A325           206 YRLV 209 Emiliania huxleyi virus 86
Q5UPX7           201 YRVV 204 Acanthamoeba polyphaga mimivirus
Q91F72           180 YRIV 183 Invertebrate iridescent virus 6
CBRAS:FFONT_0603  75 YRLV 78 
jgi:Arcve_1355    73 YRLV 76 
CGB:Asulf_00705   73 YRLV 76 
Q65181           197 IRFI 200 African swine fever virus BA71V
Q388R6           295 YRHV 298 Trypanosoma brucei
Q4DY18           278 YRQV 281 Trypanosoma cruzi
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