Conserved Protein Domain Family
lasso_PqqD_Strm

?
NF033530: lasso_PqqD_Strm 
lasso peptide biosynthesis PqqD family chaperone
Members of this family are homologs of PqqD, a chaperone that binds RiPP peptide precursors for their modification into bioactive natural products. By context, this set is involved in the biosynthesis of threaded-lasso peptides. This model focuses on lasso peptide systems from Actinobacteria. Similar systems, with different subfamilies of PqqD-related peptides, occur in lasso peptide systems in other lineages. A characterized example is LarB1 from the lariatin system of Rhodococcus jostii.
Statistics
?
PSSM-Id: 468063
Aligned: 39 rows
Threshold Bit Score: -1
Created: 24-Apr-2023
Updated: 3-May-2023
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
WP_018382051 13 RRDVTACDTGTGMVLLDERAGRYWQLNSTGARVLRALLDGDTPDQVTDALTATAggVPRARVAADVHGLLTRLAAARLT 91  Wenjunlia vitamin...
WP_020380106  8 NDGVTVAETPDGVVLLDEREGRYWQLNDTGGVVLRSLLEGGGAERAVAELRRRYpsA-GDVVAADVQKVVGRLKASGMV 85  Nocardiopsis potens
WP_005309239  6 GTDVSTAETDYGTVLLDERSGTYWELNPTGTVVIKTLLEGGDEAAAVAALLDEFd-IDREQAAQDVATLVSDLRASGLA 83  Streptomyces pris...
WP_003988506  6 GENVSTAETDYGTVLLDERAGAYWELNPTATLVVRTLLDGGEEAEAAAALVREFd-IDQAQALRDVETLVRELRGSGLA 83  Streptomyces viri...
WP_006602540  6 GDKVSTAATDYGTVLLDERNGQYWELNPTAGLIVTTLLAGGDETAAADALIAEFg-IDRRRAEQDVATLVAELRASGLA 83  Streptomyces auratus
WP_015656042  6 GADVSTAATDYGTVLLDQRTGQYWELNPTATLVIETLMAGGDEEAATTALMREYd-VPQSQARNDVNTLVQDLRASGLA 83  Streptomyces dava...
WP_004942881  4 SKGVALTSTDYGAVLLDERGGTYWQLNDSGAVIVGALAEGLAPDAVAERLAAEFd-VDAAEARADVRELVRRLVEAGIV 81  Streptomyces moba...
WP_018958805  4 RKGIAVTTTEYGGVLLDEKDGSYWQLNDTGVIVVGTLASGHTPEIAVERILADFd-VERAEAEADVAELTRQLVEARIL 81  Streptomyces sp. ...
WP_007460374  6 RKHLVVTDTDYGAVLLDTKSGEYWQLNPPGAVIVQTLLDGEGPEEAIQRVTGRFd-VGTERATADVHALIEAMRSAGVV 83  Streptomyces
WP_011291591 11 RPEISVAQTDYGMVLLDGRSGEYWQLNDTAALIVQRLLDGHSPADVAQFLTSEYe-VERTDAERDIAALVTSLKENGMA 88  Thermobifida fusca
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap