NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30313.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30313.1 Public Mus musculus X Nlgn3 23 108 98 CCDS HistoryNCBI Gene:245537Re-query CCDS DB by CCDS ID:30313.1Re-query CCDS DB by GeneID:245537See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30313.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065858.2 ENSMUSP00000066304.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065858.2Link to Ensembl Protein Viewer:ENSMUSP00000066304.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000065858Re-query CCDS DB by Protein ID:ENSMUSP00000066304
Original member Current member NCBI NM_172932.4 NP_766520.2 Accepted alive Link to Nucleotide Sequence:NM_172932.4Link to Protein Sequence:NP_766520.2Re-query CCDS DB by Nucleotide ID:NM_172932Re-query CCDS DB by Protein ID:NP_766520Link to BLAST:NP_766520.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766520.2 825 Q8BYM5 825 100% 0 0

Chromosomal Locations for CCDS 30313.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 101301984 101302431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101307075 101307134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101308757 101308906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101315132 101315317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101317929 101318718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101319419 101320262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2478 nt):
ATGTGGCTGCAGCCCTCGCTGTCCCTGAGCCCCACGCCCACAGTTGGCCGGAGCCTGTGCCTCACCCTGG
GCTTCCTCAGTTTGGTGCTGAGGGCCAGTACCCAGGCCCCGGCACCCACAGTCAATACTCACTTTGGGAA
GCTAAGGGGTGCCAGAGTACCATTGCCCAGTGAAATCCTGGGTCCTGTGGACCAATACCTGGGGGTACCC
TACGCAGCTCCCCCGATCGGCGAGAAACGTTTCCTGCCCCCTGAACCACCCCCATCCTGGTCGGGCATCC
GGAACGCCACACACTTTCCCCCAGTGTGCCCCCAGAACATCCACACAGCTGTGCCCGAAGTCATGCTGCC
AGTCTGGTTCACTGCCAACTTGGATATCGTCGCCACTTATATCCAGGAGCCCAACGAAGATTGCCTCTAT
CTGAATGTGTATGTGCCCACGGAAGATGGATCCGGCGCTAAGAAACAGGGCGAGGACTTAGCGGATAATG
ACGGGGATGAAGATGAAGACATCCGAGACAGTGGTGCTAAACCTGTCATGGTCTACATCCACGGAGGCTC
TTACATGGAAGGAACAGGCAACATGATTGATGGCAGTGTTCTTGCAAGTTACGGCAACGTCATCGTCATC
ACCCTCAACTATCGGGTCGGGGTGCTAGGTTTCCTGAGCACTGGAGATCAGGCTGCCAAGGGCAACTATG
GGCTCCTTGATCAAATCCAGGCCCTTCGCTGGGTGAGTGAGAATATTGCCTTCTTTGGAGGAGATCCCCG
TAGAATTACTGTCTTTGGCTCTGGCATCGGTGCATCCTGTGTCAGTCTCCTTACACTGTCTCATCATTCT
GAGGGGCTTTTCCAGAGGGCCATCATCCAAAGTGGCTCTGCTCTATCTAGCTGGGCTGTGAACTACCAAC
CAGTGAAGTATACCAGCTTGCTGGCAGACAAAGTGGGCTGTAACGTCCTGGACACTGTGGATATGGTGGA
TTGTCTTCGACAAAAGAGTGCCAAGGAGCTGGTAGAACAGGACATTCAGCCAGCCCGCTACCATGTGGCT
TTTGGCCCTGTGATTGATGGTGATGTCATTCCTGATGACCCTGAGATCCTTATGGAGCAGGGAGAGTTCC
TCAACTATGATATCATGCTAGGCGTCAACCAGGGTGAGGGTCTCAAGTTTGTGGAAGGGGTGGTGGACCC
CGAGGATGGTGTCTCGGGCACTGACTTTGACTACTCTGTCTCCAATTTTGTGGACAATCTGTATGGCTAT
CCTGAGGGTAAGGACACCCTGCGGGAGACTATCAAGTTCATGTATACGGACTGGGCAGACCGAGACAACC
CTGAGACCCGCCGTAAAACACTGGTGGCACTCTTCACTGACCACCAGTGGGTGGAGCCTTCAGTGGTGAC
AGCCGATCTGCACGCCCGCTATGGCTCACCTACCTACTTCTACGCCTTCTACCATCACTGCCAGAGCCTC
ATGAAGCCCGCATGGTCAGATGCAGCACACGGGGATGAAGTGCCCTATGTTTTTGGTGTCCCTATGGTAG
GTCCCACTGACCTTTTCCCCTGCAACTTCTCCAAGAATGATGTTATGCTCAGTGCTGTCGTCATGACCTA
TTGGACCAACTTTGCCAAGACCGGGGATCCCAACAAGCCGGTACCCCAGGATACCAAGTTCATTCACACC
AAGGCCAACCGCTTTGAGGAAGTGGCCTGGTCCAAATACAATCCCCGAGACCAGCTCTACCTTCACATCG
GGCTGAAACCAAGGGTTCGTGATCATTACCGGGCCACAAAGGTAGCCTTTTGGAAACACCTGGTGCCCCA
CCTGTACAACCTGCATGACATGTTCCACTATACATCCACGACCACCAAAGTGCCGCCCCCGGACACCACC
CACAGCTCCCACATCACCCGTAGGCCCAACGGCAAGACCTGGAGCACCAAGCGGCCGGCGATTTCACCTG
CCTACAGCAATGAGAATGCCCCTGGGTCCTGGAATGGGGACCAGGATGCGGGGCCACTCCTGGTTGAGAA
CCCTCGAGACTACTCCACTGAATTAAGTGTCACTATCGCTGTGGGGGCCTCCCTCCTGTTTCTCAATGTG
TTGGCCTTTGCTGCCCTCTATTACCGTAAGGACAAACGGCGCCAGGAGCCCCTGAGGCAGCCTAGCCCCC
AAAGGGGAACTGGTGCCCCTGAATTGGGAACTGCTCCGGAGGAGGAGCTGGCAGCATTACAGTTGGGTCC
CACTCACCATGAATGTGAGGCCGGTCCCCCACATGACACACTTCGCCTCACAGCACTGCCCGACTATACC
CTGACCCTGCGGCGCTCCCCTGATGACATCCCACTCATGACTCCCAACACCATCACTATGATTCCTAATT
CCCTGGTTGGGTTGCAGACCTTGCACCCCTATAACACCTTTGCCGCAGGGTTCAACAGTACTGGGCTGCC
CCACTCACACTCCACTACCCGTGTATAG

Translation (825 aa):
MWLQPSLSLSPTPTVGRSLCLTLGFLSLVLRASTQAPAPTVNTHFGKLRGARVPLPSEILGPVDQYLGVP
YAAPPIGEKRFLPPEPPPSWSGIRNATHFPPVCPQNIHTAVPEVMLPVWFTANLDIVATYIQEPNEDCLY
LNVYVPTEDGSGAKKQGEDLADNDGDEDEDIRDSGAKPVMVYIHGGSYMEGTGNMIDGSVLASYGNVIVI
TLNYRVGVLGFLSTGDQAAKGNYGLLDQIQALRWVSENIAFFGGDPRRITVFGSGIGASCVSLLTLSHHS
EGLFQRAIIQSGSALSSWAVNYQPVKYTSLLADKVGCNVLDTVDMVDCLRQKSAKELVEQDIQPARYHVA
FGPVIDGDVIPDDPEILMEQGEFLNYDIMLGVNQGEGLKFVEGVVDPEDGVSGTDFDYSVSNFVDNLYGY
PEGKDTLRETIKFMYTDWADRDNPETRRKTLVALFTDHQWVEPSVVTADLHARYGSPTYFYAFYHHCQSL
MKPAWSDAAHGDEVPYVFGVPMVGPTDLFPCNFSKNDVMLSAVVMTYWTNFAKTGDPNKPVPQDTKFIHT
KANRFEEVAWSKYNPRDQLYLHIGLKPRVRDHYRATKVAFWKHLVPHLYNLHDMFHYTSTTTKVPPPDTT
HSSHITRRPNGKTWSTKRPAISPAYSNENAPGSWNGDQDAGPLLVENPRDYSTELSVTIAVGASLLFLNV
LAFAALYYRKDKRRQEPLRQPSPQRGTGAPELGTAPEEELAALQLGPTHHECEAGPPHDTLRLTALPDYT
LTLRRSPDDIPLMTPNTITMIPNSLVGLQTLHPYNTFAAGFNSTGLPHSHSTTRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH