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Report for CCDS25535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25535.1 Public Mus musculus 11 Myl4 23 108 98 CCDS HistoryNCBI Gene:17896Re-query CCDS DB by CCDS ID:25535.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25535.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018800.8 ENSMUSP00000018800.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018800.8Link to Ensembl Protein Viewer:ENSMUSP00000018800.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000018800Re-query CCDS DB by Protein ID:ENSMUSP00000018800
Original member Current member EBI ENSMUST00000106956.9 ENSMUSP00000102569.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106956.9Link to Ensembl Protein Viewer:ENSMUSP00000102569.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000106956Re-query CCDS DB by Protein ID:ENSMUSP00000102569
Original member Current member EBI ENSMUST00000106957.7 ENSMUSP00000102570.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106957.7Link to Ensembl Protein Viewer:ENSMUSP00000102570.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106957Re-query CCDS DB by Protein ID:ENSMUSP00000102570
Original member Current member NCBI NM_001355754.1 NP_001342683.1 Accepted alive Link to Nucleotide Sequence:NM_001355754.1Link to Protein Sequence:NP_001342683.1Re-query CCDS DB by Nucleotide ID:NM_001355754Re-query CCDS DB by Protein ID:NP_001342683Link to BLAST:NP_001342683.1
Original member Current member NCBI NM_001355755.1 NP_001342684.1 Accepted alive Link to Nucleotide Sequence:NM_001355755.1Link to Protein Sequence:NP_001342684.1Re-query CCDS DB by Nucleotide ID:NM_001355755Re-query CCDS DB by Protein ID:NP_001342684Link to BLAST:NP_001342684.1
Original member Current member NCBI NM_010858.5 NP_034988.2 Accepted alive Link to Nucleotide Sequence:NM_010858.5Link to Protein Sequence:NP_034988.2Re-query CCDS DB by Nucleotide ID:NM_010858Re-query CCDS DB by Protein ID:NP_034988Link to BLAST:NP_034988.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342683.1 193 P09541 193 99.4819% 0 1
NP_001342684.1 193 P09541 193 99.4819% 0 1
NP_034988.2 193 P09541 193 99.4819% 0 1

Chromosomal Locations for CCDS 25535.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 104577452 104577574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104580402 104580429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104583978 104584127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104584439 104584612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104584937 104585014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104585727 104585755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGCCTCCCAAGAAACCCGAGCCTAAGAAGGAGACTGCCAAGCCGGCTGCAGCCCCTGCTCCAGCTGCAT
CCGCAGCTCCGGAGCCCCTCAAGGACTCTGCCTTTGACCCAAAGAGTGTGAAGATAGACTTCAGTGCTGA
CCAGATCGAAGAATTCAAAGAGGCCTTTTCATTGTTTGACCGGACTCCAACGGGAGAGATGAAGATCACC
TACGGGCAGTGTGGGGACGTGCTGCGGGCCCTGGGCCAGAACCCCACCAACGCAGAGGTGCTGCGCGTTT
TGGGCAAACCCAAGCCTGAAGAGATGAGTTCCAAGACACTGGACTTCGAGATGTTCCTGCCCATCCTGCA
ACACATCTCCCGCAACAAGGAGCAGGGCACCTATGAGGACTTCGTGGAGGGGCTGCGGGTCTTTGACAAA
GAAAGCAACGGCACAGTCATGGGTGCAGAGCTTCGGCATGTCCTTGCTACCCTGGGAGAGAAGATGAGCG
AGGCAGAGGTGGAGCAGCTGTTGTCTGGGCAGGAGGATGCCAATGGCTGCATCAACTATGAAGCCTTTGT
CAAGCACATCATGTCTGGGTAA

Translation (193 aa):
MPPKKPEPKKETAKPAAAPAPAASAAPEPLKDSAFDPKSVKIDFSADQIEEFKEAFSLFDRTPTGEMKIT
YGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMSSKTLDFEMFLPILQHISRNKEQGTYEDFVEGLRVFDK
ESNGTVMGAELRHVLATLGEKMSEAEVEQLLSGQEDANGCINYEAFVKHIMSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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