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Report for CCDS11700.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11700.2 Public Homo sapiens 17 CD300LB 24 110 108 CCDS HistoryNCBI Gene:124599Re-query CCDS DB by CCDS ID:11700.2See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 11700.1
The coding region has been updated to shorten the N-terminus to one that is more supported by available conservation data and paralogous family members. The update has a predicted N-terminal signal peptide, which is consistent with functional support for the protein (e.g., PMIDs 16920917, 19359216).

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 11700.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392621.6 ENSP00000376397.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392621.6Link to Ensembl Protein Viewer:ENSP00000376397.2Re-query CCDS DB by Nucleotide ID:ENST00000392621Re-query CCDS DB by Protein ID:ENSP00000376397
Original member Current member NCBI NM_174892.4 NP_777552.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_174892.4Link to Protein Sequence:NP_777552.3Re-query CCDS DB by Nucleotide ID:NM_174892Re-query CCDS DB by Protein ID:NP_777552Link to BLAST:NP_777552.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_777552.3 201 A8K4G0 201 100% 0 0

Chromosomal Locations for CCDS 11700.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 74522738 74522900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74523579 74523651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74525748 74526077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74531311 74531350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGTGGCTGCCCCCTGCTCTGCTCCTTCTCAGCCTCTCAGGCTGTTTCTCCATCCAAGGCCCAGAGTCTG
TGAGAGCCCCAGAGCAGGGGTCCCTGACGGTTCAATGCCACTATAAGCAAGGATGGGAGACCTACATTAA
GTGGTGGTGCCGAGGGGTGCGCTGGGATACATGCAAGATCCTCATTGAAACCAGAGGGTCGGAGCAAGGA
GAGAAGAGTGACCGTGTGTCCATCAAGGACAATCAGAAAGACCGCACGTTCACTGTGACCATGGAGGGGC
TCAGGCGAGATGACGCAGATGTTTACTGGTGTGGGATTGAAAGAAGAGGACCTGACCTTGGGACTCAAGT
GAAAGTGATCGTTGACCCAGAGGGAGCGGCTTCCACAACAGCAAGCTCACCTACCAACAGCAATATGGCA
GTGTTCATCGGCTCCCACAAGAGGAACCACTACATGCTCCTGGTATTTGTGAAGGTGCCCATCTTGCTCA
TCTTGGTCACTGCCATCCTCTGGTTGAAGGGGTCTCAGAGGGTCCCTGAGGAGCCAGGGGAACAGCCTAT
CTACATGAACTTCTCCGAACCTCTGACTAAAGACATGGCCACTTAG

Translation (201 aa):
MWLPPALLLLSLSGCFSIQGPESVRAPEQGSLTVQCHYKQGWETYIKWWCRGVRWDTCKILIETRGSEQG
EKSDRVSIKDNQKDRTFTVTMEGLRRDDADVYWCGIERRGPDLGTQVKVIVDPEGAASTTASSPTNSNMA
VFIGSHKRNHYMLLVFVKVPILLILVTAILWLKGSQRVPEEPGEQPIYMNFSEPLTKDMAT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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