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Report for CCDS45533.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45533.1 Public Homo sapiens 16 SYCE1L 24 110 108 CCDS HistoryNCBI Gene:100130958Re-query CCDS DB by CCDS ID:45533.1Re-query CCDS DB by GeneID:100130958See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45533.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378644.5 ENSP00000367911.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378644.5Link to Ensembl Protein Viewer:ENSP00000367911.4Re-query CCDS DB by Nucleotide ID:ENST00000378644Re-query CCDS DB by Protein ID:ENSP00000367911
Original member Current member NCBI NM_001129979.3 NP_001123451.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001129979.3Link to Protein Sequence:NP_001123451.1Re-query CCDS DB by Nucleotide ID:NM_001129979Re-query CCDS DB by Protein ID:NP_001123451Link to BLAST:NP_001123451.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123451.1 242 A8MT33 242 100% 0 0

Chromosomal Locations for CCDS 45533.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 77199452 77199512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 77206441 77206500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 77208210 77208269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 77208465 77208539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 77209097 77209144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 77209417 77209471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 77211213 77211276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 77212130 77212199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 77212282 77212369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 77212574 77212646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 77212857 77212931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGGCGGGGAAGCTGAAACCTCTGAATGTGGAGGCGCCAGAAGCTACTGAGGAGGCTGAAGGGCAAGCCA
AGTCTTTGAAGACTGAAGACTTGCTGGCAATGGTGATAAAGCTGCAGAAAGAGGGAAGCCTGGAGCCACA
GATAGAGGACCTGATTAGCCGGATTAATGATCTTCAGCAAGCAAAGAAGAAATCCAGTGAGGAACTGAGA
GAGACCCACAGTCTCTGGGAGGCCCTGCATAGGGAATTAGACTCCTTGAATGGAGAGAAAGTGCACCTAG
AGGAGGTCTTGGGCAAAAAGCAAGAGGCACTGAGGATCCTCCAGATGCACTGCCAAGAGAAGGAAAGCGA
GGCTCAGAGGTTGGATGTCAGAGGACAGCTGGAGGATCTGATGGGCCAGCACAAGGACCTCTGGGAATTC
CACATGCTGGAGCAGCGACTGGCCCGGGAGATCCGTGCCCTGGAGAGAAGCAAGGAGCAGCTGCTCTCGG
AGAGGAGGCTGGTGCGCGCCAAGCTGCGGGAGGTGGAGCGGCGGCTGCACTCGCCGCCTGAGGTCGAGGG
CGCCATGGCGGTGAATGACGGGCTGAAGGCGGAGCTGGAGATATTCGGGGAGCAGGTCCGGAGCGCCCCC
GAGGTCGGGGCCGGCGAGGGAGAGGCCGGACCTGAGCTCCCCCGCGCTCGCGACGAGGAGGATCCCGAGC
CGCCGGTGGCTGCCCCTGACGCCCTCTAG

Translation (242 aa):
MAGKLKPLNVEAPEATEEAEGQAKSLKTEDLLAMVIKLQKEGSLEPQIEDLISRINDLQQAKKKSSEELR
ETHSLWEALHRELDSLNGEKVHLEEVLGKKQEALRILQMHCQEKESEAQRLDVRGQLEDLMGQHKDLWEF
HMLEQRLAREIRALERSKEQLLSERRLVRAKLREVERRLHSPPEVEGAMAVNDGLKAELEIFGEQVRSAP
EVGAGEGEAGPELPRARDEEDPEPPVAAPDAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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