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Report for CCDS9244.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9244.1 Public Homo sapiens 12 MTRFR 24 110 108 CCDS HistoryNCBI Gene:91574Re-query CCDS DB by CCDS ID:9244.1Re-query CCDS DB by GeneID:91574See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9244.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253233.6 ENSP00000253233.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000253233.6Link to Ensembl Protein Viewer:ENSP00000253233.1Re-query CCDS DB by Nucleotide ID:ENST00000253233Re-query CCDS DB by Protein ID:ENSP00000253233
Original member Current member EBI ENST00000366329.7 ENSP00000390647.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366329.7Link to Ensembl Protein Viewer:ENSP00000390647.1Re-query CCDS DB by Nucleotide ID:ENST00000366329Re-query CCDS DB by Protein ID:ENSP00000390647
Original member Current member EBI ENST00000429587.2 ENSP00000391513.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429587.2Link to Ensembl Protein Viewer:ENSP00000391513.2Re-query CCDS DB by Nucleotide ID:ENST00000429587Re-query CCDS DB by Protein ID:ENSP00000391513
Original member Current member EBI ENST00000536130.2 ENSP00000443072.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536130.2Link to Ensembl Protein Viewer:ENSP00000443072.2Re-query CCDS DB by Nucleotide ID:ENST00000536130Re-query CCDS DB by Protein ID:ENSP00000443072
Original member Current member EBI ENST00000543139.2 ENSP00000444843.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543139.2Link to Ensembl Protein Viewer:ENSP00000444843.2Re-query CCDS DB by Nucleotide ID:ENST00000543139Re-query CCDS DB by Protein ID:ENSP00000444843
Original member Current member EBI ENST00000679849.1 ENSP00000505808.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679849.1Link to Ensembl Protein Viewer:ENSP00000505808.1Re-query CCDS DB by Nucleotide ID:ENST00000679849Re-query CCDS DB by Protein ID:ENSP00000505808
Original member Current member NCBI NM_001143905.2 NP_001137377.1 Accepted alive Link to Nucleotide Sequence:NM_001143905.2Link to Protein Sequence:NP_001137377.1Re-query CCDS DB by Nucleotide ID:NM_001143905Re-query CCDS DB by Protein ID:NP_001137377Link to BLAST:NP_001137377.1
Original member Current member NCBI NM_001194995.1 NP_001181924.1 Accepted alive Link to Nucleotide Sequence:NM_001194995.1Link to Protein Sequence:NP_001181924.1Re-query CCDS DB by Nucleotide ID:NM_001194995Re-query CCDS DB by Protein ID:NP_001181924Link to BLAST:NP_001181924.1
Original member Current member NCBI NM_152269.5 NP_689482.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152269.5Link to Protein Sequence:NP_689482.1Re-query CCDS DB by Nucleotide ID:NM_152269Re-query CCDS DB by Protein ID:NP_689482Link to BLAST:NP_689482.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137377.1 166 Q9H3J6-1 166 100% 0 0
NP_001181924.1 166 Q9H3J6-1 166 100% 0 0
NP_689482.1 166 Q9H3J6-1 166 100% 0 0

Chromosomal Locations for CCDS 9244.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 123253675 123253956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123256813 123257031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (501 nt):
ATGAGCACCGTGGGTTTATTTCATTTTCCTACACCACTGACCCGAATATGCCCGGCGCCATGGGGACTCC
GG
CTTTGGGAGAAGCTGACGTTGTTATCCCCAGGAATAGCTGTCACTCCGGTCCAGATGGCAGGCAAGAA
G
GACTACCCTGCACTGCTTTCCTTGGATGAGAATGAACTCGAAGAGCAGTTTGTGAAAGGACACGGTCCA
GGG
GGCCAGGCAACCAACAAAACCAGCAACTGCGTGGTGCTGAAGCACATCCCCTCAGGCATCGTTGTAA
AG
TGCCATCAGACAAGATCAGTTGATCAGAACAGAAAGCTAGCTCGGAAAATCCTACAAGAGAAAGTAGA
T
GTTTTCTACAATGGTGAAAACAGTCCTGTTCACAAAGAAAAACGAGAAGCGGCGAAGAAAAAACAAGAA
AGG
AAAAAAAGAGCAAAGGAAACCCTGGAAAAAAAGAAGCTACTTAAAGAACTGTGGGAGTCAAGTAAAA
AG
GTCCACTGA


Translation (166 aa):
MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENELEEQFVKGHGP
G
GQATNKTSNCVVLKHIPSGIVVK
CHQTRSVDQNRKLARKILQEKVDVFYNGENSPVHKEKREAAKKKQE
R
KKRAKETLEKKKLLKELWESSKKVH




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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