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Report for CCDS71007.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71007.1 Public Mus musculus 2 Inpp5e 23 108 98 CCDS HistoryNCBI Gene:64436Re-query CCDS DB by CCDS ID:71007.1Re-query CCDS DB by GeneID:64436See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71007.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114090.7 ENSMUSP00000109724.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114090.7Link to Ensembl Protein Viewer:ENSMUSP00000109724.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114090Re-query CCDS DB by Protein ID:ENSMUSP00000109724
Original member Current member NCBI NM_001290437.1 NP_001277366.1 Accepted alive Link to Nucleotide Sequence:NM_001290437.1Link to Protein Sequence:NP_001277366.1Re-query CCDS DB by Nucleotide ID:NM_001290437Re-query CCDS DB by Protein ID:NP_001277366Link to BLAST:NP_001277366.1

Chromosomal Locations for CCDS 71007.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 26397918 26397924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26398556 26398692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26399233 26399348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26399413 26399574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26400036 26400143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26400373 26400492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26400886 26401010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26401601 26401698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26402100 26402223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26407767 26408587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1818 nt):
ATGCCATCCAAGTCAGCTTGCCTGCGTCACACTGAGGCACCTGGGCAGCTAGAAGGCAGAATGCTCCAGG
GACAGCCTCCGAACACGGAAAAGAAGCTCATCCCAACACCAGGCTTCTTACCAGCCTCTGACTCTCAGGG
TTCAGAGACAAACCCCATGCCTCCTTTCAGCATTCCAGCAAAAACAAGCAACCAGAACCCACAAACTAAG
GCAAATCTCATCACCCCACAGCCACCCATTAGACCCAAGTTGGAGCGAACCCTGTCCCTCGATGACAAGG
GCTGGAGAAGGAGGCGTTTCCGGGGTAGTCAGGAGGATCTGACTGTCCAGAATGGGGCCAGTCCCTGCAG
GGGCTCCTTGCAAGACTCAGTAGCCCAGTCCCCTGCCTACAGCCGTCCCCTGCCCTGCCTCAGCACATCC
TTGCAGGAGATACCTAAGTCCCGAAGGGCCACAGGCAGTGAGGGAGGGAGCCCATCCTTGTGGAGTGACT
GTCTTTCTGGAATGATCAGCACCTCCTTGGACCTCCTGCACAGAGATGCTGCCTCAGGTGGGCCCCCCTC
CAGGTTGGCAAGTTTGCATGCCTCACACACACCACCAGCTATGGACCTCAGCATAGCCTCCAGCTCCCTG
AGAACAGCAAACAAGGTTGACCCCGAGCACACGGACTACAAGCTCCGCATGCAGACCAGACTGGTCAGGG
CCCACAGCAACCTGGGCCCTAGCAGACCCCGGAGCCCCTTGGCTGGTGACGATCACTCCATTCACTCAGC
CAGATCTTTCAGCCTTCTGGCCCCCATCCGCACCAAGGACATCAGAAGCAGGAGCTATCTGGAGGGAAGT
CTTCTGGCCAGTGGGGCCCTGCTAGGAGCAGAAGAGCTGGCCAGGTACTTCCCAGACCGAAACATGGCTC
TCTTCGTGGCTACCTGGAACATGCAGGGCCAGAAGGAGCTCCCAGCGAGCCTGGATGAGTTTCTGCTCCC
CACCGAGGCTGACTACACTCAGGACCTGTATGTCATTGGAATTCAGGAGGGCTGCTCTGACAGGCGGGAG
TGGGAGACACGCCTGCAGGAGACACTGGGCCCTCAGTATGTACTGCTGTCATCAGCAGCACATGGGGTCC
TGTACATGTCCCTGTTTATCCGTAGGGACCTCATCTGGTTCTGCTCAGAGGTCGAGTACTCCACAGTAAC
TACACGCATCGTGTCTCAGATCAAGACCAAGGGGGCCCTGGGCGTCAGCTTCACCTTTTTTGGCACCTCC
TTCCTCTTCATCACATCTCACTTCACCTCTGGAGATGGGAAGGTAGCAGAGCGGCTACTGGACTACAGCA
GAACCATCCAAGCCCTAGCCCTGCCCCGGAATGTGCCAGACACAAATCCCTACCGCTCTAGTGCAGGGGA
TGTCACTACCCGGTTTGATGAGGTCTTCTGGTTTGGGGACTTCAACTTCCGCCTGAGTGGTGGACGAGTG
GCTGTGGAGGCCTTCCTGAAGCAGAAACCTGAGGTGGATGTGCTGGCTCTCCTCCAACACGACCAGCTCA
CCCGGGAGATGAAGAAAGGGTCCATCTTCAGGGGCTTTGAGGAGGCAGAGATTCACTTTCTTCCATCCTA
CAAGTTTGACATTGGGAAGGACACCTACGACAGCACCTCCAAGCAAAGGACACCCTCCTACACAGACCGA
GTCCTATACAAAAGCCGTCACAAGGGTGACATCTGTCCCATGAAGTATTCCTCTTGTCCTGGGATCAAGA
CTTCAGACCACCGTCCTGTGTATGGCTTGTTCCAGGTGAAAGTGAGGCCAGGACGAGACAAGAATTAA

Translation (605 aa):
MPSKSACLRHTEAPGQLEGRMLQGQPPNTEKKLIPTPGFLPASDSQGSETNPMPPFSIPAKTSNQNPQTK
ANLITPQPPIRPKLERTLSLDDKGWRRRRFRGSQEDLTVQNGASPCRGSLQDSVAQSPAYSRPLPCLSTS
LQEIPKSRRATGSEGGSPSLWSDCLSGMISTSLDLLHRDAASGGPPSRLASLHASHTPPAMDLSIASSSL
RTANKVDPEHTDYKLRMQTRLVRAHSNLGPSRPRSPLAGDDHSIHSARSFSLLAPIRTKDIRSRSYLEGS
LLASGALLGAEELARYFPDRNMALFVATWNMQGQKELPASLDEFLLPTEADYTQDLYVIGIQEGCSDRRE
WETRLQETLGPQYVLLSSAAHGVLYMSLFIRRDLIWFCSEVEYSTVTTRIVSQIKTKGALGVSFTFFGTS
FLFITSHFTSGDGKVAERLLDYSRTIQALALPRNVPDTNPYRSSAGDVTTRFDEVFWFGDFNFRLSGGRV
AVEAFLKQKPEVDVLALLQHDQLTREMKKGSIFRGFEEAEIHFLPSYKFDIGKDTYDSTSKQRTPSYTDR
VLYKSRHKGDICPMKYSSCPGIKTSDHRPVYGLFQVKVRPGRDKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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