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Report for CCDS40353.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40353.1 Public Mus musculus 8 Tma16 23 108 98 CCDS HistoryNCBI Gene:66282Re-query CCDS DB by CCDS ID:40353.1Re-query CCDS DB by GeneID:66282See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40353.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026681.6 ENSMUSP00000026681.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026681.6Link to Ensembl Protein Viewer:ENSMUSP00000026681.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000026681Re-query CCDS DB by Protein ID:ENSMUSP00000026681
Original member Current member NCBI NM_025465.3 NP_079741.1 Accepted alive Link to Nucleotide Sequence:NM_025465.3Link to Protein Sequence:NP_079741.1Re-query CCDS DB by Nucleotide ID:NM_025465Re-query CCDS DB by Protein ID:NP_079741Link to BLAST:NP_079741.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079741.1 221 Q9CR02-1 221 100% 0 0

Chromosomal Locations for CCDS 40353.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 66476675 66476909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66478015 66478057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66480340 66480488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66481463 66481547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66482506 66482543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66484058 66484170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66486412 66486414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGCCTAAAGGACTAAAAGGAAAAATGGTAGGACGAGAAAAAAAAGTCATCCATCCGTACAGTAGAAAAG
CAGCTCAGATTACAAGAGAGTCTCACAAACAAGACAAGAAGGAAAGATTGAAGACTGAGAAGGCCTTGCG
TCTCAACCTTATTGGTGACAAACTTCAATGGTTTCACAGTCATCTGGATATGAAAAAAACAAGATATTCA
AAGAAAGATGCCTGTGAATTAGTTGAAAGGTACTTGGATCGGTTCAGCAGTGAGCTGGAGCAGATTGAGT
TACAGAACAGCATCAAAGACAGGCAGGGAAGGCGGCACCATTCCCGGGAGGCCGTCATCAAGCAGACCCT
GGAGCGGGAGCGGCAGCAGTACGAAGGCTATGGCTTTGAGATCCCAGACATTTTAGACTCTAATACTCTG
CAGACTTTCCGGGAATGGGATTTTGATCTGAAGAAATTGCCAAACATCAAAATGAGGAAACTTTGTGCTG
ATGATGCAGTTCCTAAGAAGCGCAAACAGAAAAATATTTTAAATATAGAAAAGGATTTAGGAGAATTAGA
ACTATCAGGGCCAACTGGAGCCACTACAGATGGGAAACTGGAACCAGCAAGTGAATCAAGTGACACGGAT
GAAGAAATGACTCCAGTGCCTGTCAGCCCTCATTGA

Translation (221 aa):
MPKGLKGKMVGREKKVIHPYSRKAAQITRESHKQDKKERLKTEKALRLNLIGDKLQWFHSHLDMKKTRYS
KKDACELVERYLDRFSSELEQIELQNSIKDRQGRRHHSREAVIKQTLERERQQYEGYGFEIPDILDSNTL
QTFREWDFDLKKLPNIKMRKLCADDAVPKKRKQKNILNIEKDLGELELSGPTGATTDGKLEPASESSDTD
EEMTPVPVSPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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