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Report for CCDS39959.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39959.2 Public Mus musculus 7 Fam83e 23 108 98 CCDS HistoryNCBI Gene:73813Re-query CCDS DB by CCDS ID:39959.2Re-query CCDS DB by GeneID:73813See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 39959.1
The coding region has been updated to represent an alternate exon or splice site that is more supported by the available transcript and protein data

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 39959.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000129507.4 ENSMUSP00000114397.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129507.4Link to Ensembl Protein Viewer:ENSMUSP00000114397.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000129507Re-query CCDS DB by Protein ID:ENSMUSP00000114397
Original member Current member NCBI NM_001033170.4 NP_001028342.2 Accepted alive Link to Nucleotide Sequence:NM_001033170.4Link to Protein Sequence:NP_001028342.2Re-query CCDS DB by Nucleotide ID:NM_001033170Re-query CCDS DB by Protein ID:NP_001028342Link to BLAST:NP_001028342.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028342.2 481 Q80XS7 481 100% 0 0

Chromosomal Locations for CCDS 39959.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45722181 45722654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45723441 45723608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45723854 45723978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45726632 45727076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45728766 45728999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGGCAGCCTCCCAGCTGGCCGCGCTGGAAGGAGAGGAGTTGGGGGCTGGCGAGCCAGCCCTAACGAAGG
CCAGCCCTGCCGTCTTGTACTCTGAGGGCCAGCGGCTGGCACTCGAAGCCCTGCTGAGCAGTGGCGAGGA
GACTTTCTGGGCCTGTGTGCAGCAGGAGAGGTTGCCCCCCTTTCTGAGTGCAGATGAGGCTCAGGCCCTG
GCTACGGCTGCTGAAGACTGGCTAGTACCTAGCCAGGAGCCTGGTGCAGCAGGCACGGGAACAGCCATCA
CCGATGGGGACGTGGGCAGCCTGACCTACTGGCCGAGGCAATCTGAGGAGCCGGCACCCCTGCTGCGGCT
TGGCTGGCCTGAAGACACTGCCTGGAAGGGCATCACCCGGGCGCAACTCTACACCCAGCCACCAGGCGAG
GGCCAACCACCCATTAAAGAGTTGGTACACCAGGAAATCCAGGCTGCTCGAAAGCTGGTGGCTGTAGTCA
TGGATGTCTTCACCGACCCTGACCTGCTCAGAGACATGGTGGATGCTGCTACCCGCCGATGGATTCCTGT
CTACTTACTGCTTGACCACCAGCATCTGCCTGCCTTCCTGGCACTAGCCCAGCAGTTAGGGGTGAACCTG
TGGACCACTGAGAACCTGGATATCCGGACCGTGCAGGGCCACACCTTCCAGAGCCGCAGGCGACGGCAGG
TGAGCGGCCATGTGCGGGAGAAGTTCGTGCTCCTGGACGGTGACAGGGTCATCTCGGGATCCTACAGCTT
CACATGGAGTGACTCACGCCTGCACCGGAGCCTGGTGACCTTGCTCACAGGAGAAATTGCAGATGCCTTC
AACCAGGAGTTCCGTGTCCTGTACGCAGCCTCCAGGCCGCTCTCTGCAGCTCCGGCTCGAAGCCCTTTGT
TCAGTCCTCCTGAGGGCCCACAGCTGCCCCGAAGCCCACACCGTGTGGCCCTGCGCTGTCCTGTGGCCCC
TGTAGCCCCATTGCTGTCTGATGGGCCTTTGGCTCAACGCCTGGCTGCCTGTCACATCCTCGAGCGGGAC
AAACAGGAGACCCCCACCACCACGGGGCCAGCTCTCAGTGACATCTTGAGGAGTGTACAGCGCACCAGGA
CAACCAGTGGTCCCCCGACCCGACCCAGCCGCTCCCTATGGGACCTTAGCCGCCTGTCCCAGCTCTCTGG
CTCAAGTGATGGTGAAAATGAGTCCAAGAAGTTCTGGGTCTCCAAGGACACTCCAGCCAGGGCCCTGATG
AGGCAGCGGGGCACTGGAGGTGGGCCCAGAGCTGAGATGGATTCCCGTTCACAGCCCTGGGGTGGCCCCC
TACCCTCGATTCCAGCCCGCCGCCTGCGTTACCTATCCCCAGCCCAAAGGAGATTGGGGGACAATGCCAC
CACATCAGACTGGGCCTCTGGCTCAGGCTCTGGAAGGAGACGCTGA

Translation (481 aa):
MAASQLAALEGEELGAGEPALTKASPAVLYSEGQRLALEALLSSGEETFWACVQQERLPPFLSADEAQAL
ATAAEDWLVPSQEPGAAGTGTAITDGDVGSLTYWPRQSEEPAPLLRLGWPEDTAWKGITRAQLYTQPPGE
GQPPIKELVHQEIQAARKLVAVVMDVFTDPDLLRDMVDAATRRWIPVYLLLDHQHLPAFLALAQQLGVNL
WTTENLDIRTVQGHTFQSRRRRQVSGHVREKFVLLDGDRVISGSYSFTWSDSRLHRSLVTLLTGEIADAF
NQEFRVLYAASRPLSAAPARSPLFSPPEGPQLPRSPHRVALRCPVAPVAPLLSDGPLAQRLAACHILERD
KQETPTTTGPALSDILRSVQRTRTTSGPPTRPSRSLWDLSRLSQLSGSSDGENESKKFWVSKDTPARALM
RQRGTGGGPRAEMDSRSQPWGGPLPSIPARRLRYLSPAQRRLGDNATTSDWASGSGSGRRR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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