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Report for CCDS36661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36661.1 Public Mus musculus 13 Fbxw17 23 108 98 CCDS HistoryNCBI Gene:109082Re-query CCDS DB by CCDS ID:36661.1Re-query CCDS DB by GeneID:109082See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36661.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046974.4 ENSMUSP00000041750.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046974.4Link to Ensembl Protein Viewer:ENSMUSP00000041750.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000046974Re-query CCDS DB by Protein ID:ENSMUSP00000041750
Original member Current member NCBI NM_175401.4 NP_780610.2 Accepted alive Link to Nucleotide Sequence:NM_175401.4Link to Protein Sequence:NP_780610.2Re-query CCDS DB by Nucleotide ID:NM_175401Re-query CCDS DB by Protein ID:NP_780610Link to BLAST:NP_780610.2

Chromosomal Locations for CCDS 36661.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 50417898 50417987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 50419840 50419877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 50423202 50423362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 50423752 50423870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 50425557 50425766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 50426622 50426780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 50431540 50431750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 50432171 50432346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 50432428 50432555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 50433298 50433406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGGCGCCGCAGCTTGGCCCGCACGAACTGCAGCACATCTTCTCCTTCCTGGAGGCCCGGGACCTGCTGC
GCGCTGCGCAGGTGAACAAGGTCTGGAATGAGGTTTCGATGACCAAGGAACTGTGGAGGCAGCTGTGTCT
GAGGCGATGGGCCTCCTGCAAGGCCTTCCCAGTGGTCGTGGGCACGCAAACATGGAAGAAGTACTATTTC
TGCCGGTCTGAGCTAGAGTTCCGTATGGAATCTGGGCGGCCACAGGATTTCATCTGCAAAGCTATTTCTG
GGCACACAGGAATGATAGATCAGCTGGCCTACGTCTCACCCCATGAGTACCGCTTTGATGAAGGGGCAAG
GTCCGTGGTTTGCACTGTGTCTTCAGACTGTACTGTGCGTGCCTGGGATCTGCAGGAGGGCTCAGAGATC
TGGTCAAGTGCTGTGCAGCCTGCTCCTCTGGTGAATGTGGTGGCCTATCCTCAGCTGCAGCTGGTTGTCA
CTGTGGACATACAGGGCTTGATCATGGGGTGGAAAGCAAAGACCGGGTCTGAGTGGGCCTTCTTCAGCTT
GCCGGCATCCTGTTCTTCAATGGAGGCCTGTGACCACCCAGAGGGCCCCTTCTTGCTGGTAGCCTGTGAT
GAAGGGACCCTCTACACTATGACAGTACCTCAGCTGCAAGTGGTCTCCAGAGTACCCACATTTCCTCACT
CCTCTGTGAGCCTCACGTGCTCCCCTGACACACAGTGGGTATTTGTGTCTGCACAAGGCTCAGACTTAGG
CCCAAAGGTGTTCTACACTCAGCCCTTGCTGCACCCATCAGAAGACAGACTTCCTGTCTCCACTACCCTT
CCCATCAGGCTGAGCTCCAGAGCCTGCTGGGCTCCGGATGAGGCAGCCAGACTGATGGTGATACACAGAG
ATGACGGTGGCGTGCATCTGGTTATCACTACCTTCGAGTTAAAGGCCACCAAGTCCAGGGACAGATTGAG
CATCCTTGCACAGCAGCTGGCCAGCTTCCACCTGCCGGACACTATGACTCCTCACCTCATGCAGGGCCAT
GGCTCCCAAACGATCCTGCTCACCTCCAGGTCAGAGCTGGTGCTCTTCACCATACATGGCCTGCAGCTGA
TGGCCTTCCAGGACCACCAGAGGCCAATCACGTCTATGTGGGTGGATCCAGACCGTGTCATCACTGCTGC
CTTGGACCTGTCCTTGCGTGTCTATGTGTGGAATAAAAAGAACACATCACCTGTCCTCAAGAGCTGTTAC
CATTTGCTCGGGGGATCTCACAGATGGGCCAGTGGATTCACCCACGTGAAGAGTGACAGCAGAAGCATTG
CTGGGGTGGAAGCCAGAAGCACTGGGACAAGTATTCTGAGGTCATATTGCTTCAAGGTTAAGCTTGACTA
G

Translation (466 aa):
MAPQLGPHELQHIFSFLEARDLLRAAQVNKVWNEVSMTKELWRQLCLRRWASCKAFPVVVGTQTWKKYYF
CRSELEFRMESGRPQDFICKAISGHTGMIDQLAYVSPHEYRFDEGARSVVCTVSSDCTVRAWDLQEGSEI
WSSAVQPAPLVNVVAYPQLQLVVTVDIQGLIMGWKAKTGSEWAFFSLPASCSSMEACDHPEGPFLLVACD
EGTLYTMTVPQLQVVSRVPTFPHSSVSLTCSPDTQWVFVSAQGSDLGPKVFYTQPLLHPSEDRLPVSTTL
PIRLSSRACWAPDEAARLMVIHRDDGGVHLVITTFELKATKSRDRLSILAQQLASFHLPDTMTPHLMQGH
GSQTILLTSRSELVLFTIHGLQLMAFQDHQRPITSMWVDPDRVITAALDLSLRVYVWNKKNTSPVLKSCY
HLLGGSHRWASGFTHVKSDSRSIAGVEARSTGTSILRSYCFKVKLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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