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Fbxw17 F-box and WD-40 domain protein 17 [ Mus musculus (house mouse) ]

Gene ID: 109082, updated on 12-May-2024

Summary

Official Symbol
Fbxw17provided by MGI
Official Full Name
F-box and WD-40 domain protein 17provided by MGI
Primary source
MGI:MGI:1923584
See related
Ensembl:ENSMUSG00000037816 AllianceGenome:MGI:1923584
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110064L07Rik
Expression
Ubiquitous expression in ovary adult (RPKM 8.9), subcutaneous fat pad adult (RPKM 8.3) and 27 other tissues See more
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Genomic context

See Fbxw17 in Genome Data Viewer
Location:
13 A5; 13 25.72 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (50571874..50587817)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (50417835..50433781)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2H pseudogene Neighboring gene STARR-seq mESC enhancer starr_34487 Neighboring gene predicted gene 8742 Neighboring gene predicted gene, 40946 Neighboring gene STARR-seq mESC enhancer starr_34489 Neighboring gene NUT family member 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
F-box and WD-40 domain protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175401.4NP_780610.2  F-box and WD-40 domain protein 17

    See identical proteins and their annotated locations for NP_780610.2

    Status: VALIDATED

    Source sequence(s)
    AK135553, BC040428, BX518527
    Consensus CDS
    CCDS36661.1
    UniProtKB/TrEMBL
    Q8CFE8
    Related
    ENSMUSP00000041750.5, ENSMUST00000046974.5
    Conserved Domains (3) summary
    COG2319
    Location:90417
    WD40; WD40 repeat [General function prediction only]
    pfam12937
    Location:748
    F-box-like; F-box-like
    sd00039
    Location:151186
    7WD40; WD40 repeat [structural motif]

RNA

  1. NR_154272.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC165366
    Related
    ENSMUST00000176479.8
  2. NR_154273.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC165366

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    50571874..50587817
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006516829.2XP_006516892.1  F-box and WD-40 domain protein 17 isoform X3

    Conserved Domains (2) summary
    COG2319
    Location:48375
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:109144
    7WD40; WD40 repeat [structural motif]
  2. XM_006516832.2XP_006516895.1  F-box and WD-40 domain protein 17 isoform X6

    See identical proteins and their annotated locations for XP_006516895.1

    Conserved Domains (2) summary
    COG2319
    Location:12339
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:73108
    7WD40; WD40 repeat [structural motif]
  3. XM_030247125.1XP_030102985.1  F-box and WD-40 domain protein 17 isoform X7

    Conserved Domains (2) summary
    COG2319
    Location:12172
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:73108
    7WD40; WD40 repeat [structural motif]
  4. XM_006516833.2XP_006516896.1  F-box and WD-40 domain protein 17 isoform X6

    See identical proteins and their annotated locations for XP_006516896.1

    Conserved Domains (2) summary
    COG2319
    Location:12339
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:73108
    7WD40; WD40 repeat [structural motif]
  5. XM_006516828.4XP_006516891.1  F-box and WD-40 domain protein 17 isoform X2

    Conserved Domains (3) summary
    COG2319
    Location:90250
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:151186
    7WD40; WD40 repeat [structural motif]
    pfam12937
    Location:746
    F-box-like
  6. XM_006516830.5XP_006516893.1  F-box and WD-40 domain protein 17 isoform X4

    Conserved Domains (3) summary
    COG2319
    Location:90250
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:151186
    7WD40; WD40 repeat [structural motif]
    pfam12937
    Location:746
    F-box-like
  7. XM_006516831.4XP_006516894.1  F-box and WD-40 domain protein 17 isoform X5

    Conserved Domains (3) summary
    COG2319
    Location:90250
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:151186
    7WD40; WD40 repeat [structural motif]
    pfam12937
    Location:746
    F-box-like
  8. XM_006516827.2XP_006516890.1  F-box and WD-40 domain protein 17 isoform X1

    Conserved Domains (2) summary
    COG2319
    Location:69396
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:130165
    7WD40; WD40 repeat [structural motif]
  9. XM_036157831.1XP_036013724.1  F-box and WD-40 domain protein 17 isoform X6

    Conserved Domains (2) summary
    COG2319
    Location:12339
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:73108
    7WD40; WD40 repeat [structural motif]
  10. XM_036157832.1XP_036013725.1  F-box and WD-40 domain protein 17 isoform X6

    Conserved Domains (2) summary
    COG2319
    Location:12339
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:73108
    7WD40; WD40 repeat [structural motif]

RNA

  1. XR_004937931.1 RNA Sequence

  2. XR_004937932.1 RNA Sequence

  3. XR_004937927.1 RNA Sequence

  4. XR_004937929.1 RNA Sequence

  5. XR_004937930.1 RNA Sequence

  6. XR_004937928.1 RNA Sequence

  7. XR_003950416.2 RNA Sequence

  8. XR_003950420.2 RNA Sequence

  9. XR_003950412.1 RNA Sequence

  10. XR_003950413.1 RNA Sequence

  11. XR_003950414.1 RNA Sequence

  12. XR_382225.4 RNA Sequence

  13. XR_382223.4 RNA Sequence

  14. XR_382224.5 RNA Sequence