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Report for CCDS34917.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34917.1 Public Homo sapiens 8 SLC7A13 24 110 108 CCDS HistoryNCBI Gene:157724Re-query CCDS DB by CCDS ID:34917.1Re-query CCDS DB by GeneID:157724See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34917.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297524.8 ENSP00000297524.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297524.8Link to Ensembl Protein Viewer:ENSP00000297524.3Re-query CCDS DB by Nucleotide ID:ENST00000297524Re-query CCDS DB by Protein ID:ENSP00000297524
Original member Current member NCBI NM_138817.3 NP_620172.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138817.3Link to Protein Sequence:NP_620172.2Re-query CCDS DB by Nucleotide ID:NM_138817Re-query CCDS DB by Protein ID:NP_620172Link to BLAST:NP_620172.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620172.2 470 Q8TCU3-1 470 100% 0 0

Chromosomal Locations for CCDS 34917.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 86214413 86214646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86217470 86217831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86222972 86223103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86229593 86230277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGGATAGAGGGGAGAAAATACAGCTCAAGAGAGTGTTTGGATATTGGTGGGGCACAAGTTTTTTGCTTA
TTAATATCATTGGTGCAGGAATTTTTGTGTCCCCCAAAGGTGTGTTGGCATACTCTTGCATGAACGTGGG
AGTCTCCCTGTGCGTTTGGGCTGGCTGTGCCATACTGGCCATGACATCAACTCTTTGCTCTGCAGAGATA
AGTATAAGCTTCCCATGCAGTGGAGCTCAATACTATTTTCTCAAGAGATACTTTGGCTCCACGGTTGCTT
TTTTGAATCTCTGGACATCCTTGTTTCTGGGGTCAGGGGTAGTTGCTGGCCAAGCTCTGCTCCTTGCTGA
GTACAGCATCCAGCCTTTTTTTCCCAGCTGCTCTGTCCCAAAGCTGCCTAAGAAATGTCTGGCATTGGCC
ATGTTGTGGATTGTAGGAATTCTGACTTCTCGTGGTGTGAAAGAAGTGACTTGGCTTCAGATAGCTAGCT
CAGTGCTGAAAGTGTCCATACTTAGCTTCATTTCCCTAACTGGAGTAGTGTTCCTGATAAGAGGGAAAAA
GGAGAATGTAGAACGATTTCAGAATGCTTTTGATGCTGAACTTCCAGATATCTCTCACCTTATACAAGCC
ATCTTCCAAGGATATTTTGCATATTCAGGCGGGGCATGCTTTACACTTATAGCAGGGGAGCTGAAGAAGC
CCAGAACAACAATTCCCAAATGCATATTTACTGCGTTACCTCTGGTGACTGTAGTTTATTTACTGGTTAA
CATTTCCTATCTGACTGTTCTGACACCCAGGGAAATTCTCTCTTCAGATGCTGTAGCTATCACATGGGCT
GATCGAGCTTTTCCCTCATTAGCATGGATTATGCCTTTTGCTATTTCTACCTCATTATTTAGCAACCTTC
TGATTTCTATATTTAAATCATCGAGACCAATATATCTTGCAAGCCAAGAGGGCCAGCTGCCTTTGCTATT
TAATACACTTAATAGTCACTCTTCTCCATTTACAGCTGTGCTACTACTTGTCACTTTGGGATCCCTTGCA
ATTATCTTAACAAGTCTAATTGATTTGATAAACTATATTTTTTTCACGGGTTCATTATGGTCTATATTAT
TAATGATAGGAATACTAAGGCGGAGATACCAGGAACCCAATCTATCTATACCTTATAAGGTGTTTTTGTC
ATTTCCATTAGCAACAATAGTCATCGACGTGGGCTTGGTTGTGATACCATTGGTAAAGTCTCCAAATGTG
CATTATGTCTACGTGCTTCTGTTAGTTCTCAGCGGATTACTATTTTACATACCTTTAATACATTTTAAAA
TAAGATTGGCTTGGTTTGAGAAGATGACTTGCTATTTACAATTACTATTTAATATTTGCCTCCCTGATGT
GTCTGAGGAATAG

Translation (470 aa):
MDRGEKIQLKRVFGYWWGTSFLLINIIGAGIFVSPKGVLAYSCMNVGVSLCVWAGCAILAMTSTLCSAEI
SISFPCSGAQYYFLKRYFGSTVAFLNLWTSLFLGSGVVAGQALLLAEYSIQPFFPSCSVPKLPKKCLALA
MLWIVGILTSRGVKEVTWLQIASSVLKVSILSFISLTGVVFLIRGKKENVERFQNAFDAELPDISHLIQA
IFQGYFAYSGGACFTLIAGELKKPRTTIPKCIFTALPLVTVVYLLVNISYLTVLTPREILSSDAVAITWA
DRAFPSLAWIMPFAISTSLFSNLLISIFKSSRPIYLASQEGQLPLLFNTLNSHSSPFTAVLLLVTLGSLA
IILTSLIDLINYIFFTGSLWSILLMIGILRRRYQEPNLSIPYKVFLSFPLATIVIDVGLVVIPLVKSPNV
HYVYVLLLVLSGLLFYIPLIHFKIRLAWFEKMTCYLQLLFNICLPDVSEE


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 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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