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Report for CCDS11766.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11766.1 Public Homo sapiens 17 TBC1D16 24 110 108 CCDS HistoryNCBI Gene:125058Re-query CCDS DB by CCDS ID:11766.1Re-query CCDS DB by GeneID:125058See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11766.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310924.7 ENSP00000309794.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000310924.7Link to Ensembl Protein Viewer:ENSP00000309794.2Re-query CCDS DB by Nucleotide ID:ENST00000310924Re-query CCDS DB by Protein ID:ENSP00000309794
Original member Current member NCBI NM_019020.4 NP_061893.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019020.4Link to Protein Sequence:NP_061893.2Re-query CCDS DB by Nucleotide ID:NM_019020Re-query CCDS DB by Protein ID:NP_061893Link to BLAST:NP_061893.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061893.2 767 Q8TBP0-1 767 100% 0 0

Chromosomal Locations for CCDS 11766.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 79940859 79941107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79942060 79942206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79944908 79945087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79947645 79947831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79948872 79949006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79949717 79949865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79950411 79950578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79951450 79951597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79952657 79952818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80010160 80010757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80013367 80013547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2304 nt):
ATGTCTCTGGGCCGCCTCCTTCGCAGGGCCTCCTCCAAAGCCTCGGACCTCCTGACCCTCACCCCCGGTG
GC
AGCGGCAGCGGGTCCCCCTCTGTCCTGGATGGAGAGATCATCTACTCCAAGAACAATGTCTGCGTGCA
C
CCGCCGGAGGGGCTGCAGGGGCTGGGGGAGCACCACCCAGGTTACCTGTGCTTGTACATGGAGAAGGAT
GAG
ATGCTGGGAGCCACCCTCATCCTGGCATGGGTCCCCAACTCTCGCATCCAGAGGCAGGACGAGGAGG
CC
CTGCGCTACATCACACCCGAGAGCTCCCCCGTTCGCAAGGCACCCCGCCCTCGGGGCCGGCGCACCCG
G
AGCTCAGGAGCCTCCCACCAGCCCTCCCCGACGGAGCTGCGGCCTACCCTGACCCCCAAAGATGAGGAC
ATC
CTGGTGGTGGCCCAGAGTGTTCCAGACCGCATGCTCGCCAGCCCTGCGCCAGAGGATGAGGAGAAGC
TG
GCGCAGGGCTTGGGGGTGGATGGTGCCCAGCCAGCCTCGCAGCCTGCTTGCAGCCCCTCCGGGATCTT
G
TCGACGGTCAGTCCGCAGGATGTCACCGAGGAGGGGCGGGAGCCGCGGCCCGAGGCCGGGGAGGAGGAT
GGC
TCTTTGGAACTGTCAGCCGAGGGCGTGAGCAGAGACAGCTCCTTTGACTCAGACTCAGACACCTTCT
CC
TCGCCCTTCTGCCTCTCGCCCATCAGCGCGGCGCTGGCCGAGAGCCGCGGCTCCGTGTTTCTGGAAAG
T
GACAGCAGCCCCCCGTCCAGCTCCGACGCCGGCCTGCGGTTCCCGGACAGCAACGGCCTCCTGCAGACC
CCA
CGCTGGGACGAGCCGCAGCGGGTGTGCGCCCTGGAGCAGATTTGCGGCGTGTTCCGCGTGGACCTGG
GC
CACATGCGCTCCCTCCGCCTTTTCTTCAGCGACGAGGCCTGCACCAGCGGCCAGCTGGTCGTTGCCAG
C
CGAGAGAGCCAGTACAAGGTTTTCCACTTCCACCACGGCGGCCTGGACAAGCTGTCTGACGTGTTCCAG
CAG
TGGAAATACTGCACCGAGATGCAGCTCAAAGACCAGCAGGTCGCCCCCGATAAGACATGCATGCAGT
TC
TCCATCCGCCGCCCCAAGCTGCCGTCCTCCGAGACGCACCCCGAGGAGAGCATGTACAAGAGGCTCGG
C
GTCTCCGCCTGGCTCAACCACCTGAATGAGCTGGGCCAGGTGGAGGAGGAGTACAAGCTGCGGAAGGCC
ATT
TTCTTTGGCGGTATTGATGTGTCAATCCGCGGGGAGGTCTGGCCCTTCCTGCTGCGCTATTACAGCC
AC
GAGTCCACGTCGGAGGAGCGGGAGGCGCTGCGGCTGCAGAAGCGAAAGGAGTACTCTGAGATCCAGCA
G
AAAAGGCTCTCCATGACTCCCGAGGAGCACAGAGCGTTCTGGCGTAATGTGCAGTTCACTGTGGACAAA
GAC
GTGGTCCGGACAGATCGGAACAACCAGTTCTTCCGGGGGGAAGACAATCCCAATGTGGAGAGCATGA
G
G
AGGATCCTGCTGAACTACGCCGTGTACAACCCTGCCGTCGGCTATTCCCAAGGGATGTCGGACCTGGT
G
GCGCCCATCTTGGCCGAGGTCCTGGATGAGTCAGACACCTTCTGGTGCTTTGTGGGTTTGATGCAGAAC
ACG
ATCTTCGTCAGCTCACCCCGGGACGAGGACATGGAGAAACAACTGCTGTACCTGCGCGAGCTGCTGC
GG
CTGACGCACGTGCGCTTCTACCAGCACCTGGTCTCGCTGGGCGAGGACGGCCTGCAGATGCTCTTCTG
C
CACCGCTGGCTCCTTCTGTGCTTCAAGCGGGAGTTCCCCGAGGCCGAAGCGCTGCGGATCTGGGAGGCC
TGC
TGGGCCCACTACCAGACGGACTACTTCCACCTTTTCATCTGCGTGGCCATCGTGGCCATCTACGGGG
AT
GACGTCATCGAGCAGCAGCTGGCCACGGACCAGATGCTCCTGCACTTCGGAAACCTGGCCATGCACAT
G
AACGGGGAGCTCGTTCTCCGGAAGGCGAGGAGTTTGCTGTACCAGTTCCGCCTCCTGCCCCGGATCCCC
TGC
AGCCTGCACGATCTGTGTAAGCTGTGCGGGTCAGGCATGTGGGACAGCGGCTCCATGCCCGCGGTGG
AG
TGCACCGGCCACCATCCCGGCTCGGAGAGCTGTCCCTACGGGGGCACGGTGGAGATGCCTTCCCCCAA
G
TCCCTGAGGGAAGGCAAGAAGGGCCCAAAGACGCCGCAGGACGGCTTCGGCTTCCGCAGATAG


Translation (767 aa):
MSLGRLLRRASSKASDLLTLTPGGSGSGSPSVLDGEIIYSKNNVCVHPPEGLQGLGEHHPGYLCLYMEKD
E
MLGATLILAWVPNSRIQRQDEEALRYITPESSPVRKAPRPRGRRTRSSGASHQPSPTELRPTLTPKDED
I
LVVAQSVPDRMLASPAPEDEEKLAQGLGVDGAQPASQPACSPSGILSTVSPQDVTEEGREPRPEAGEED
G
SLELSAEGVSRDSSFDSDSDTFSSPFCLSPISAALAESRGSVFLESDS
SPPSSSDAGLRFPDSNGLLQT
P
RWDEPQRVCALEQICGVFRVDLGHMRSLRLFF
SDEACTSGQLVVASRESQYKVFHFHHGGLDKLSDVFQ
Q
WKYCTEMQLKDQ
QVAPDKTCMQFSIRRPKLPSSETHPEESMYKRLGVSAWLNHLNELGQVEEEYKLRKA
I
FFGGIDVSIRGEVWPFLLRYYSHESTSEEREALRLQKRKEYSEIQQK
RLSMTPEEHRAFWRNVQFTVDK
D
VVRTDRNNQFFRGEDNPNVESM
RRILLNYAVYNPAVGYSQGMSDLVAPILAEVLDESDTFWCFVGLMQN
T
IFVSSPRDEDMEKQL
LYLRELLRLTHVRFYQHLVSLGEDGLQMLFCHRWLLLCFKREFPEAEALRIWEA
C
WAHYQ
TDYFHLFICVAIVAIYGDDVIEQQLATDQMLLHFGNLAMHMNGELVLRKARSLLYQFRLLPRIP
C
SLHDLCKLCGSGMWDSGSMPAVECTGHHPGSESCPYGGTVEMPSPKSLREGKKGPKTPQDGFGFRR




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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