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Report for CCDS94090.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94090.1 Public Homo sapiens 7 SPDYE1 24 110 108 CCDS HistoryNCBI Gene:285955Re-query CCDS DB by CCDS ID:94090.1Re-query CCDS DB by GeneID:285955See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 94090.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000652520.1 ENSP00000499187.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000652520.1Link to Ensembl Protein Viewer:ENSP00000499187.1Re-query CCDS DB by Nucleotide ID:ENST00000652520Re-query CCDS DB by Protein ID:ENSP00000499187
Original member Current member EBI ENST00000693451.1 ENSP00000509569.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000693451.1Link to Ensembl Protein Viewer:ENSP00000509569.1Re-query CCDS DB by Nucleotide ID:ENST00000693451Re-query CCDS DB by Protein ID:ENSP00000509569
Original member Current member NCBI NM_001378423.2 NP_001365352.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001378423.2Link to Protein Sequence:NP_001365352.1Re-query CCDS DB by Nucleotide ID:NM_001378423Re-query CCDS DB by Protein ID:NP_001365352Link to BLAST:NP_001365352.1

Chromosomal Locations for CCDS 94090.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 43999950 44000109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44001066 44001284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44002590 44002817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44003853 44003911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44005142 44005227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44007268 44007586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44007709 44007768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGGACAGAACGGAGACTAGGTTCCGTAAGAGGGGACAGATTACGGGAAAGATCACGACCAGCCGTCAAC
CGCACCGCCAGAATGAGCAGAGTCCCCAGCGGAGCACCTCGGGGTACCCCCTCCAGGAGGTGGTGGATGA
TGAAGTGTTGGGACCATCAGCCCCTGGGGTAGATCCCAGCCCCCCATGTAGGTCCCTTGGCTGGAAAAGG
AAGAGGGAGTGGTCAGATGAATCTGAGGAGGAGCCGGAGAAGGAGCTCGCCCCTGAGCCTGAGGAGACCT
GGGTAGTGGAGACGCTGTGTGGGCTCAAGATGAAGCTGAAGCAACAGCGAGTGTCACCCATCCTCCTTGA
GCACCACAAGGACTTCAACAGTCAGCTTGCCCCTGGGGTAGATCCCAGCCCCCCGCATAGGTCCTTTTGC
TGGAAAAGGAAGATGGAGTGGTGGGACAAATCTGAGGAGTCGGAGGAGGAGCCACGGAAGGTGCTCGCCC
CTGAGCCTGAGGAGATCTGGGTGGCGGAGATGCTGTGTGGCCTCAAGATGAAGCTGAAGCGACGGCGAGT
GTCGCTCGTGCTCCCTGAGCACCACGAGGCCTTCAACAGGCTGCTTGAGGATCCTGTCATTAAAAGATTC
CTGGCCTGGGACAAAGATCTGAGGGTGTCGGACAAGTATCTCCTTGCTATGGTCATAGCGTATTTCAGCC
GAGCCGGCTTCCCCTCCTGGCAATACCAACGCCTTCATTTCTTCCTGGCTCTCTACCTGGCCAATGACAT
GGAGGAGGACGACGAGGACTCCAAACAAAACATCTTCCACTTCCTGTATGGGAAGAACCGCTCTCGCATA
CCCTTGCTCCGTAAGCGTCGGTTCCAGTTATACCGTTCCATGAACCCGAGGGCCAGGAAGAACCGCTCTC
ACATACCCTTGGTCCGTAAGCGTCGGTTCCAGTTACGCCGTTGCATGAACCCGAGGGCCAGGAAGAACCG
CTCTCAGATAGTCCTGTTCCAGAAACGTCGGTTCCACTTCTTCTGTTCCATGAGCTGCAGGGCTTGGGTT
TCCCCAGAGGAGTTGGAGGAGATCCAGGCTTATGACCCAGAGCACTGGGTGTGGGCGCGAGATCGCGCTC
GCCTTTCCTAG

Translation (376 aa):
MDRTETRFRKRGQITGKITTSRQPHRQNEQSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPCRSLGWKR
KREWSDESEEEPEKELAPEPEETWVVETLCGLKMKLKQQRVSPILLEHHKDFNSQLAPGVDPSPPHRSFC
WKRKMEWWDKSEESEEEPRKVLAPEPEEIWVAEMLCGLKMKLKRRRVSLVLPEHHEAFNRLLEDPVIKRF
LAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRLHFFLALYLANDMEEDDEDSKQNIFHFLYGKNRSRI
PLLRKRRFQLYRSMNPRARKNRSHIPLVRKRRFQLRRCMNPRARKNRSQIVLFQKRRFHFFCSMSCRAWV
SPEELEEIQAYDPEHWVWARDRARLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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