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Report for CCDS90615.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90615.1 Public Mus musculus 9 Sltm 23 108 98 CCDS HistoryNCBI Gene:66660Re-query CCDS DB by CCDS ID:90615.1Re-query CCDS DB by GeneID:66660See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90615.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000216816.1 ENSMUSP00000149059.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216816.1Link to Ensembl Protein Viewer:ENSMUSP00000149059.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216816Re-query CCDS DB by Protein ID:ENSMUSP00000149059
Original member Current member NCBI NM_026337.2 NP_080613.1 Accepted alive Link to Nucleotide Sequence:NM_026337.2Link to Protein Sequence:NP_080613.1Re-query CCDS DB by Nucleotide ID:NM_026337Re-query CCDS DB by Protein ID:NP_080613Link to BLAST:NP_080613.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080613.1 1013 Q8CH25-2 1013 100% 0 0

Chromosomal Locations for CCDS 90615.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 70542920 70543081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70543970 70544057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70559037 70559101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70561776 70561973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70562814 70562861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70572149 70572176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70573511 70573925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70574576 70574625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70576722 70576840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70579282 70579431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70579952 70580055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70580167 70580330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70580783 70580868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70581301 70581464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70583932 70584112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70584753 70584877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70585924 70586088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70586635 70586949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70587051 70587195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70588957 70589117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70591579 70591687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3042 nt):
ATGGCTGCCGCTGCCGGGGCCGTGGTAGCCTCGGCCGCCTCTGGGCCGGCGGAAGGGAAGAAGATCACGG
AGCTGCGGGTTATCGACCTCAGGTCCGAGCTGAAGCGCCGCAACTTGGACATCAACGGGGTCAAGACGGT
ACTGGTCTCCCGGCTGAAGCAGGCTATTGAAGAGGAAGGAGGCGATCCAGATAATATTGAATTAACTGTT
TCAACTGATACTCCAAACAAGAAACCAACCAAAGGCAAAGGTAAAAAACAAGAAGCAGATGAGTTGAGTG
GAGATGCTTCTGTGGAAGATGATTCTTTTGTCAAGGACTGTGAATTGGAGAATCAAGAGACACATGACCA
AGATGGAAATGAAGAGCTAAAGGACTTGGAAGAATTTGGTGAAAATGAAGAGGAAATTGTGCATTCCCAG
GAGTTGCTTTCTACAGAAGAGAACAAGACAACTCAGGAATTTGTAGAGGCAGAAGCAATAGAAGATAGAG
AAAAAGAGGACATCGAAAGTCAGGAAACTGAAGCTCAAGAAGGTGAAGATGACACCTTTCTAACAGCTCA
AGATGGTGAGGAAGAAGAAAATGAGAAAGAAGGGAGCCTAGCTGAGGCTGATCACACAGCTCATGAAGAG
ATGGAAGCTAATGCGACTGGGAAAGAAGCTGAGGATGACAACATCTCGGTCACAATCCAGGCTGAAGATG
CCATCACTCTGGATTTTGATGGTGATGACCTCCTAGAAACAGGTAAAAATGTGAAAATTACAGATTCTGA
AGCAAGTAAGCCAAAAGATGTGCAGGACGCCATTGCACAGAGCCCGGAGAAGGAAGCCAAGGATTATGAG
ATGAACCCGAACCATAAAGATGGTAAGAAGGAAGACTCCGTGAAGGGTGAGCCTGTCGAGAAGGAAGCCA
GAGAAAGTGCTAAGAAAGCAGAATCTGGAGACAAAGAAAAGGATACTTTGAAGAAAGGGCCCTCGTCTAC
AGGGGCCTCTGGTCAAGCAAAGAGCTCTTCAAAGGAATCTAAAGACAGCAAGACATCATCTAAAGATGAC
AAAGGGAGCACAGGCAGTGCTGGTGGGAGCAGTGGAAGCTCAACCAAGAACATCTGGGTCAGTGGACTGT
CTTCTAATACCAAAGCTGCTGATTTGAAGAACCTCTTTGGCAAATATGGAAAGGTTCTAAGTGCAAAGGT
AGTTACAAATGCTCGAAGTCCTGGGGCAAAATGCTATGGCATCGTAACCATGTCTTCAAGCACAGAAGTG
TCCAGATGTGTTGCACATCTCCATCGCACAGAGCTGCATGGACAACTGATTTCTGTGGAGAAAGTCAAAG
GTGATCCTTCTAAGAAAGAAATGAAGAAAGAAAATGATGAGAAGAGTAGCTCACGGAGCGCTGGTGATAA
AAAGAACGCGAGTGATCGGAGTGCCAAGACACAAGCATCTATTAAAAAAGAAGAGAAAAGGTCATCTGAG
AAATCAGAAAAAAAAGAAAGCAAAGATACTAAGAAAATAGAGAAAGATGAGAAGAACGACGATGGTCCAA
GTGGGCAGACTTCAGAGTCCCTGAAAAAGAGTGAAGAGAAGAAGCGGATAAGTTCAAAGAGTCCAGGACA
TATGGTGATACTAAACCAAACCAAGGGAGATCATTGTAGGCCGTCAAGAAGGGGCAGATATGAGAAAGGT
CATGGAAGAAGCAAAGAAAAGGAGAGGGCTAGCCTAGATAAAAAAAGAGACAAAGACTACAGAAGGAAAG
AGATCTTGCCTTTTGAAAAGATGAAGGAACAAAGATTGAGAGAACATTTAGTTCGTTTTGAAAGACTGAA
ACAAGCAGTGGAATTCAGAAGACGAAAAGAGATTGCAGAAAGAGAGCGTCGAGAGCGTGAACGCATTAGA
ATAATTCGTGAACGGGAAGAACGGGAACGCTTACAGAGAGAGAGAGAGCGCCTAGAAATTGAAAGGCAAA
AACTAGAGAGAGAGAGAATGGAACGCGAACGCTTGGAAAGGGAACGCATTCGTATTGAACAGGAGCGGCG
CAGGGAAGCTGAAAGGATTGCTCGGGAGAGAGAGGAGCTCAGAAGGCAGCAGCAGCAGCTTCGCTATGAA
CAAGAAAAAAGGAATTCTTTGAAACGCCCACGTGACGTAGACCATAGGCGAGATGACCCTTACTGGAGCG
AGAATAAAAAGTTATCTCTAGATACAGAGGCACGATTCGGCCATGGGTCTGACTATCGTCAACAGAGCAG
GTTCCTTGACTTCAGTCACCGAGAACGGGCCAGGTTTCCTGACACTGCATCTGTGCAGTCATCCTTTGAA
AGACGGGAACGGTTTGTTGGTCAAAGTGAAGGAAAGAAACCGAGACCAGCAGCCCGAAGAGAAGAGCCAA
GTTTTGAAAGGTACCCTAAAAACTTCAGTGATTCCAGAAGAAATGAGCCTCCACCACCAAGAAATGAACT
TAGAGAAACAGACAGACGAGAGGTCCGAGGGGAGAGAGACGAGAGAAGAACAGTAATCCTTCATGACCGA
CCTGAGGTCGCTCACCCCAGACACCCTCGAGAGACTGTGCCCAATCCTTCTAGACCAACTTCCTGGAAAA
GCGAAGCGAATATGTCCACAGAGAAACGGGAGTCACGAGTTGAAAGGCCAGAAAGATCTGGGAGAGAAGT
CTCTGGACACACTGTGAGGGGAGCGCCCCCCGGGAATCGGAGTAGTGCCTCAGGCTATGGAACCCGAGAG
GGAGAGCGAGGAGTCATTGCTGACAGAGGAAGCGGAACACAGCACTACCCTGAAGAACGACATGTCGTGG
AACGTCATGGACGGGACACAAGTGGACCAAGGAAAGAGTGGCATGGCCCACCCTCTCAGGGGCCTAGCTA
CCATGACACAAGACGAATGGGTGATGGCCGAGCAGGAGCAGGCATGATAACCCAACACTCAAGCACTGCG
TCCCCAGTGAACAGGATTGTACAGATGAGTGGTAACTCCTTGCCAAGAGGAAGCAGCTCGGGGTTTAAGC
CGTTTAAGAGTGGACCTCCACGGCGATTTTAA

Translation (1013 aa):
MAAAAGAVVASAASGPAEGKKITELRVIDLRSELKRRNLDINGVKTVLVSRLKQAIEEEGGDPDNIELTV
STDTPNKKPTKGKGKKQEADELSGDASVEDDSFVKDCELENQETHDQDGNEELKDLEEFGENEEEIVHSQ
ELLSTEENKTTQEFVEAEAIEDREKEDIESQETEAQEGEDDTFLTAQDGEEEENEKEGSLAEADHTAHEE
MEANATGKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITDSEASKPKDVQDAIAQSPEKEAKDYE
MNPNHKDGKKEDSVKGEPVEKEARESAKKAESGDKEKDTLKKGPSSTGASGQAKSSSKESKDSKTSSKDD
KGSTGSAGGSSGSSTKNIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEV
SRCVAHLHRTELHGQLISVEKVKGDPSKKEMKKENDEKSSSRSAGDKKNASDRSAKTQASIKKEEKRSSE
KSEKKESKDTKKIEKDEKNDDGPSGQTSESLKKSEEKKRISSKSPGHMVILNQTKGDHCRPSRRGRYEKG
HGRSKEKERASLDKKRDKDYRRKEILPFEKMKEQRLREHLVRFERLKQAVEFRRRKEIAERERRERERIR
IIREREERERLQRERERLEIERQKLERERMERERLERERIRIEQERRREAERIAREREELRRQQQQLRYE
QEKRNSLKRPRDVDHRRDDPYWSENKKLSLDTEARFGHGSDYRQQSRFLDFSHRERARFPDTASVQSSFE
RRERFVGQSEGKKPRPAARREEPSFERYPKNFSDSRRNEPPPPRNELRETDRREVRGERDERRTVILHDR
PEVAHPRHPRETVPNPSRPTSWKSEANMSTEKRESRVERPERSGREVSGHTVRGAPPGNRSSASGYGTRE
GERGVIADRGSGTQHYPEERHVVERHGRDTSGPRKEWHGPPSQGPSYHDTRRMGDGRAGAGMITQHSSTA
SPVNRIVQMSGNSLPRGSSSGFKPFKSGPPRRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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