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Report for CCDS71963.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71963.1 Public Mus musculus 7 Sec1 23 108 98 CCDS HistoryNCBI Gene:56546Re-query CCDS DB by CCDS ID:71963.1Re-query CCDS DB by GeneID:56546See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71963.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040636.8 ENSMUSP00000045229.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040636.8Link to Ensembl Protein Viewer:ENSMUSP00000045229.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000040636Re-query CCDS DB by Protein ID:ENSMUSP00000045229
Original member NCBI NM_001271578.1 NP_001258507.1 Updated not alive Link to Nucleotide Sequence:NM_001271578.1Link to Protein Sequence:NP_001258507.1Re-query CCDS DB by Nucleotide ID:NM_001271578Re-query CCDS DB by Protein ID:NP_001258507
Current member NCBI NM_001271578.2 NP_001258507.1 Accepted alive Link to Nucleotide Sequence:NM_001271578.2Link to Protein Sequence:NP_001258507.1Re-query CCDS DB by Nucleotide ID:NM_001271578Re-query CCDS DB by Protein ID:NP_001258507Link to BLAST:NP_001258507.1

Chromosomal Locations for CCDS 71963.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45678452 45679524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45684180 45684276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGCCACCCGAGACTGCGTGGGACAGGAGCACTGTCGCCCCCAGCAGGCTTGAAGCTTGGTGGCCCCAAA
CAAGCCGGCCTAGAAGGATCCAAGCAGTGCTCCAGCGACTCAGGGCCATCTGCCCACCCCTCTCCACCTT
CTACCTCTTCTTCGTGATTTTCGTGGTGTCTACCATCTTCCACTGCCACCGGCGCCTGAGTCTGGTGCCT
GGCCCCTGGGCCTCGCCATCCCTTGTGGTCTTCCCCCCAAGACACATGCCCCGGGAGGGCATGTTCACCA
TCAGAGTCAAAGGCCGCCTGGGGAACCAGATGGGCGAATATGCCACGCTGTTTGCACTGGCCCGGATGAA
TGGACGGCTTGCCTTCATCCCTGCGTCCATGCACAGCACACTAGCGCCCATCTTCAGGATCAGCCTCCCG
GTGTTGCATAGCGACACAGCCAAAAGGATCCCGTGGCAGAATTACCACCTCAACGACTGGATGGAGGAGC
GTTACCGCCACATCCCGGGGCAGTATGTGCGTTTCACGGGATACCCGTGCTCCTGGACCTTCTACCACCA
CCTGCGCCCAGAGATCCTGAAGGAGTTCACCCTGCACGACCATGTGCGTGAGGAGGCCCAGGCCTTCCTG
CGTGGCCTGCAGGTGAATGGGAGCCAGCCAAGTACCTTTGTGGGTGTCCATGTGCGCCGAGGGGACTATG
TGCGTGTCATGCCCAAGGTGTGGAAGGGTGTGGTGGCTGACCGGGGTTACCTAGAAAAGGCCCTGGACAG
GTTCCGGGCACGCTATTCATCTCCAGTCTTCGTGGTCACCAGTGATGACATGGCCTGGTGCCGGAAGAGC
ATCACTGCCTCCCGAGGGGACGTGGCATTTGCTGGCAATGGCCTTCAGGGATCGCCTGCCAAGGACATTG
CATTGCTCATGCAGTGCAACCACACCGTCATCACGCTGGGGACCTTTGGGATCTGGGCTGCCTACCTCAC
GGGTGGGGACACTGTTTACCTGGCTAACTTTACCCAGCCCAACTCCCCCTTCCACACGGTTTTCAAGCCA
GAAGCAGCTTACCTGCCCGAGTGGGTGGGCATCGCAGCTGACCTGGGACAGCCAAACACAGTAGGCTCTG
GCCATGCCTCAGCCAGAGCCCCCAAGAGGCACTGGGGGGCCTTGCTGTAG

Translation (389 aa):
MPPETAWDRSTVAPSRLEAWWPQTSRPRRIQAVLQRLRAICPPLSTFYLFFVIFVVSTIFHCHRRLSLVP
GPWASPSLVVFPPRHMPREGMFTIRVKGRLGNQMGEYATLFALARMNGRLAFIPASMHSTLAPIFRISLP
VLHSDTAKRIPWQNYHLNDWMEERYRHIPGQYVRFTGYPCSWTFYHHLRPEILKEFTLHDHVREEAQAFL
RGLQVNGSQPSTFVGVHVRRGDYVRVMPKVWKGVVADRGYLEKALDRFRARYSSPVFVVTSDDMAWCRKS
ITASRGDVAFAGNGLQGSPAKDIALLMQCNHTVITLGTFGIWAAYLTGGDTVYLANFTQPNSPFHTVFKP
EAAYLPEWVGIAADLGQPNTVGSGHASARAPKRHWGALL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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