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Report for CCDS51805.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51805.1 Public Mus musculus 6 Smyd1 23 108 98 CCDS HistoryNCBI Gene:12180Re-query CCDS DB by CCDS ID:51805.1Re-query CCDS DB by GeneID:12180See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51805.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074301.9 ENSMUSP00000073911.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074301.9Link to Ensembl Protein Viewer:ENSMUSP00000073911.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000074301Re-query CCDS DB by Protein ID:ENSMUSP00000073911
Original member Current member NCBI NM_001160127.1 NP_001153599.1 Accepted alive Link to Nucleotide Sequence:NM_001160127.1Link to Protein Sequence:NP_001153599.1Re-query CCDS DB by Nucleotide ID:NM_001160127Re-query CCDS DB by Protein ID:NP_001153599Link to BLAST:NP_001153599.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153599.1 490 P97443-1 490 100% 0 0

Chromosomal Locations for CCDS 51805.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 71215751 71215909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71216728 71216896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71219258 71219421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71220928 71221020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71225332 71225521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71235343 71235381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71237357 71237487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71238548 71238761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71239550 71239726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71262068 71262204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGACAATAGGCAGCATGGAGAACGTGGAGGTCTTCACTTCCGAGGGCAAAGGCAGAGGTCTGAAGGCTA
CGAAGGAGTTCTGGGCTGCGGATGTCATCTTTGCGGAGAGGGCTTATTCTGCAGTGGTTTTTGACAGCCT
CATTAACTTCGTGTGCCACACCTGCTTCAAGAGGCAGGAGAAGCTCCATCGCTGCGGGCAGTGCAAGTTC
GCCCATTACTGCGACCGCACGTGCCAGAAGGATGCTTGGCTGAATCACAAGAACGAGTGCGCTGCCATCA
AGAAATATGGGAAAGTGCCCAACGAGAACATCAGGCTGGCCGCCCGCATCATGTGGCGGGTGGAGAGAGA
GGGCACTGGGCTCACAGAGGGCTGCCTGGTGTCCGTGGATGACTTACAGAACCACGTGGAGCACTTTGGG
GAGGAGGAGCAGAAGGAACTCCGAGTAGACGTGGACACGTTCTTGCAGTACTGGCCACCACAGAGCCAGC
AGTTCAGCATGCAGTATATCTCACACATCTTTGGTGTGATCAACTGCAACGGTTTCACTCTCAGTGACCA
GAGAGGGCTACAGGCAGTAGGTGTGGGCATCTTCCCCAACCTGGGCCTGGTGAACCATGATTGCTGGCCA
AACTGCACTGTCATATTCAACAATGGCAATCATGAGGCAGTGAAATCCATGTTTCACACGCAGATGAGGA
TTGAGCTCCGGGCCCTGGGCAAGATCTCAGAAGGCGAGGAGCTGACTGTGTCCTACATAGACTTCCTGCA
CCTCAGTGAGGAGCGCAGGCGGCAGCTGAAGAAACAGTACTACTTTGACTGCTCCTGTGAGCACTGCCAG
AAGGGGCTGAAGGACGACCTCTTCCTGGCAGCGAAGGAAGACCCCAAGCCCTCCCAGGAAGTGGTGAAGG
AGATGATACAATTCTCAAAGGATACACTGGAAAAAATAGACAAGGCTCGCTCCGAGGGTTTGTATCACGA
GGTTGTGAAGCTGTGTCGGGAGTGCCTGGAGAAGCAGGAGCCAGTGTTCGCCGACACCAACCTCTACGTG
CTTCGGCTGCTCAGCATTGCATCAGAGGTCCTCTCCTACCTCCAGGCCTATGAGGAGGCCTCACATTATG
CCAGGAGGATGGTTGATGGCTACATGAAACTCTACCACCATAACAATGCCCAACTGGGCATGGCTGTGAT
GAGGGCAGGGCTTACCAACTGGCATGCTGGTCACATCGAAGTGGGGCATGGGATGATCTGCAAAGCCTAT
GCTATTCTCCTGGTGACCCATGGACCCTCCCACCCTATCACCAAAGACTTAGAGGCCATGCGGATGCAGA
CAGAGATGGAGCTGCGTATGTTCCGCCAAAACGAATTCATGTATCACAAGATGCGAGAGGCTGCCCTGAA
CAACCAGCCCATGCAGGTCATGGCTGAGCCTAGCAATGAACCAGCCCCCGCTCTGTTCCATAAGAAGCAG
TGA

Translation (490 aa):
MTIGSMENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKF
AHYCDRTCQKDAWLNHKNECAAIKKYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDDLQNHVEHFG
EEEQKELRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWP
NCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQ
KGLKDDLFLAAKEDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYV
LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY
AILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQVMAEPSNEPAPALFHKKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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