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Report for CCDS51446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51446.1 Public Mus musculus 5 Dpp6 23 108 98 CCDS HistoryNCBI Gene:13483Re-query CCDS DB by CCDS ID:51446.1Re-query CCDS DB by GeneID:13483See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51446.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122171.7 ENSMUSP00000113441.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122171.7Link to Ensembl Protein Viewer:ENSMUSP00000113441.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122171Re-query CCDS DB by Protein ID:ENSMUSP00000113441
Original member Current member NCBI NM_207282.3 NP_997165.2 Accepted alive Link to Nucleotide Sequence:NM_207282.3Link to Protein Sequence:NP_997165.2Re-query CCDS DB by Nucleotide ID:NM_207282Re-query CCDS DB by Protein ID:NP_997165Link to BLAST:NP_997165.2

Chromosomal Locations for CCDS 51446.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 27049589 27049813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27382755 27382869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27398914 27399012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27451188 27451282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27469411 27469485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27537982 27538034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27557552 27557633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27598802 27598922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27631379 27631533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27634509 27634606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27652177 27652300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27653700 27653738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27661587 27661694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27663430 27663521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27664713 27664760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27666410 27666528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27696850 27696897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27709450 27709548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27712608 27712677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27714372 27714566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27718454 27718508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27721045 27721156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27722673 27722731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27723372 27723444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27723541 27723614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27725605 27725751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2580 nt):
ATGGCTTCGCTGTACCAAAGGTTCACCGGCAAGATCAACACCTCGCGCTCCTTTCCGGCGCCCCCGGAGG
CCAGTCGCCTTCTGGGTGGCCAGGGGCCCGAGGAGGACGCGGGCCCGAAGCCCCTTGGGCCGCAGGCGCA
GGCGGTGGCGCCCAGGGAGCGCGGCGGTGCTGGTGGCCGGCCCCGGTTCCAGTACCAGGCGCGGAGCGAC
TGTGACGAGGAGGACGAGCTGGTGGGGAGTAATCCTCCACAGAGGAACTGGAAAGGAATCGCCATTGCGC
TGCTCGTCATCCTTGTCATCTGCTCTCTGATTGTCACCTCAGTCATCCTGTTGACCCCAGCGGAAGATAC
CAGTCTGTCTCAGAAGAAAAAAGTGACTGTGGAAGATCTCTTCAGTGAAGACTTCAAAATCCATGACCCA
GAGGCAAAGTGGATAAGCAATAAGGAATTCATCTACAGAGAACGGAAAGGGAGTGTCATACTGCGGAATG
TTGAAACAAATAATTCCACGGTGTTAATAGAAGGCAAAAAAATTGAATCCTTGAGAGCCATCAGATATGA
AATATCCCCAGATAAAGAGTATGTGCTGTTCTCCTATAATGTGGAGCCGGTATACCAACACTCCCACACT
GGATATTATGTTCTGAGCAAAATTCCTCATGGGGACCCTCAGAGTCTGGACCCACCAGAAGTCAGCAACG
CAAAGCTTCAGTATGCAGGGTGGGGCCCAAAAGGCCAGCAGCTGATATTTATCTTTGAGAACAACATCTA
CTACTGTGCACACGTTGGAAAGCAGGCAATTCGAGTGGTCTCTACAGGGAAGGAGGGCGTGATCTACAAT
GGCCTCAGTGACTGGCTGTATGAAGAGGAGATTCTGAAGAGCCACATCGCTCATTGGTGGTCACCAGATG
GTACAAGGCTCGCCTATGCCACCATCAACGACTCCCGGGTTCCACTTATGGAGCTGCCAACGTACACAGG
CTCTGTCTACCCCACTGTGAAGCCCTACCACTATCCTAAGGCTGGCAGTGAAAACCCCAGCATCTCGCTC
CATGTCATCGGCTTGAATGGACCCACCCACGACCTGGAGATGATGCCACCTGATGACCCGCGCATGAGGG
AATATTACATCACCATGGTGAAATGGGCCACCAGCACCAAGGTCGCTGTGACCTGGCTGAACCGGGCCCA
GAATGTGTCAATCCTGACCCTCTGTGATGCCACCACGGGTGTCTGCACTAAGAAACATGAAGATGAAAGC
GAAGCCTGGCTCCACAGACAGAATGAAGAGCCTGTGTTCTCCAAAGATGGCAGGAAGTTTTTCTTTGTCA
GAGCGATCCCACAGGGAGGCCGGGGTAAATTCTACCATATCACCGTATCATCATCCCAGCCCAACAGCAG
CAATGACAACATCCAGTCTATCACCTCTGGAGACTGGGATGTGACCAAGATCCTGTCCTATGATGAGAAG
CGGAATAAGATCTATTTCCTGAGCACAGAAGACCTGCCACGGAGACGACATCTCTACAGTGCCAACACGG
TAGATGACTTCAACAGGCAGTGTCTGTCATGTGACTTGGTGGAGAACTGCACCTATGTCAGCGCTTCTTT
CAGCCATAACATGGACTTCTTCCTGCTCAAGTGTGAAGGCCCTGGCGTACCCACTGTTACTGTGCATAAC
ACCACGGACAAGAGAAGAATGTTTGACTTGGAAGCAAATGAGGAAGTTCAGAAGGCTATCAACGACCGGC
AGATGCCGAAGATTGAATATCGAAAAATTGAAGTAGAAGATTACAGCTTGCCAATGCAAATCTTGAAGCC
GGCCACCTTCACCGACACAGCTCACTACCCCTTATTGCTCGTGGTGGATGGTACCCCAGGGAGTCAGAGC
GTGACAGAGAGGTTTGAGGTGACCTGGGAAACAGTGTTGGTGAGCAGCCATGGAGCCGTGGTGGTCAAGT
GTGACGGCCGAGGCAGCGGCTTCCAGGGAACCAAGCTCCTACAGGAAGTACGGAGGCGGCTAGGCTTCCT
GGAGGAGAAGGACCAGATGGAAGCTGTAAGAACTATGCTGAAGGAGCAGTATATTGACAAGACTCGGGTA
GCTGTGTTTGGGAAGGATTATGGTGGGTACCTGAGCACTTACATCCTCCCAGCCAAGGGAGAAAATCAAG
GTCAGACTTTCACCTGCGGCTCTGCGCTCTCTCCAATAACAGACTTCAAACTCTATGCCTCTGCATTTTC
TGAGAGGTACCTTGGCCTCCATGGACTCGACAACAGAGCGTATGAGATGACCAAGCTGGCACACCGAGTG
TCAGCACTGGAGGACCAGCAGTTCCTGATCATCCACGCCACGGCCGATGAAAAAATCCATTTCCAGCACA
CAGCTGAGCTCATCACGCAGCTGATCAAGGGAAAGGCCAATTACAGCTTACAGATCTACCCAGATGAGAG
TCACTACTTCCACAGCGTGGCGCTCAAGCAGCACCTGTCCAGGTCCATCATCGGCTTCTTTGTGGAATGT
TTCAGAGTCCAAGATAAGCTACCAACAGCCACAGCAAAAGAGGAGGAGGAGGAGGACTAA

Translation (859 aa):
MASLYQRFTGKINTSRSFPAPPEASRLLGGQGPEEDAGPKPLGPQAQAVAPRERGGAGGRPRFQYQARSD
CDEEDELVGSNPPQRNWKGIAIALLVILVICSLIVTSVILLTPAEDTSLSQKKKVTVEDLFSEDFKIHDP
EAKWISNKEFIYRERKGSVILRNVETNNSTVLIEGKKIESLRAIRYEISPDKEYVLFSYNVEPVYQHSHT
GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYN
GLSDWLYEEEILKSHIAHWWSPDGTRLAYATINDSRVPLMELPTYTGSVYPTVKPYHYPKAGSENPSISL
HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES
EAWLHRQNEEPVFSKDGRKFFFVRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILSYDEK
RNKIYFLSTEDLPRRRHLYSANTVDDFNRQCLSCDLVENCTYVSASFSHNMDFFLLKCEGPGVPTVTVHN
TTDKRRMFDLEANEEVQKAINDRQMPKIEYRKIEVEDYSLPMQILKPATFTDTAHYPLLLVVDGTPGSQS
VTERFEVTWETVLVSSHGAVVVKCDGRGSGFQGTKLLQEVRRRLGFLEEKDQMEAVRTMLKEQYIDKTRV
AVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLHGLDNRAYEMTKLAHRV
SALEDQQFLIIHATADEKIHFQHTAELITQLIKGKANYSLQIYPDESHYFHSVALKQHLSRSIIGFFVEC
FRVQDKLPTATAKEEEEED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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