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Report for CCDS44110.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44110.1 Public Homo sapiens 1 MANEAL 24 110 108 CCDS HistoryNCBI Gene:149175Re-query CCDS DB by CCDS ID:44110.1Re-query CCDS DB by GeneID:149175See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44110.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373045.11 ENSP00000362136.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373045.11Link to Ensembl Protein Viewer:ENSP00000362136.6Re-query CCDS DB by Nucleotide ID:ENST00000373045Re-query CCDS DB by Protein ID:ENSP00000362136
Original member Current member NCBI NM_001113482.2 NP_001106954.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001113482.2Link to Protein Sequence:NP_001106954.1Re-query CCDS DB by Nucleotide ID:NM_001113482Re-query CCDS DB by Protein ID:NP_001106954Link to BLAST:NP_001106954.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106954.1 457 Q5VSG8-1 457 100% 0 0

Chromosomal Locations for CCDS 44110.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37794183 37794732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37795737 37795846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37796744 37796820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37799567 37800203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1374 nt):
ATGGCCCGGCGGCGGCGCCGCGCCTGCATCGCTCTGTTCCTGGTGCTGCTCTTCGCCTTCGGCACCCTCA
TGGGTCTGCGCACGCTCAAGGCTCCGGACGGACTCCCGGCGCTGGGCCCGGGCCTGGAGCTGGCGCCCTT
TGAGCGACGCCCAGAGGGGGCCCCCGCGCCCGCTGCCAGGGCCCCGGCAGCCCCTGCCGCGCCGCCCCCG
CCGCCGCCGCCGCCCCGCACCGCGGACCCTGGCGGCTCCCCTGGGCCGGCACCCGCGGAGGCCGAGCCCG
CCCCCGTGCAGAGCCTGCGCGTCTACTCGGACCTGCACGCCTTCTACTACTCGTGGTACGGGAGCCCGCG
GCGCGAGGGCCACTACATTCACTGGGACCACGTCATGGTGCCGCACTGGGACCCCAAGATCTCGGCCAGC
TACCCCCGCGGCCGCCACAGCCCCCCAGACGACTTGGGCTCCAGCTTCTACCCGGAGCTGGGGCCCTACA
GCTCCCGGGACCCCGAAGTGCTGCGGGAGCATATGACCCAGCTCAAGGAAGCCGCCATCGGCGTCCTGGT
CCTGTCCTGGTACCCACCTGGCATGGCTGATGATAACGGGGAGCCCTCAGATGACCTGGTGCCCGCCATT
CTGGACACCGCCCATCAGTACAGCATCCAGGTGGCCTTCCACATCCAACCCTACAAGGGCCGGGATGACA
TCACTGTACATGACAACATCAAGTACATCATTGACACGTATGGCTCCCATGGTGCATTTTACCGCTATAA
GAACAGCATGGGCAAGAGCCTCCCACTCTTTTATATCTACGACTCATACCTGACGTCCCCTGAGGCCTGG
GCCCACCTCCTGACACCAAACGGGCCCCATTCGATCCGCAACACGCCCTACGATGGGGTCTTCATAGCGC
TGCTGGTGGAGGAGGGCCACACCCACGATATCCTGGCCGCCGGATTTGACGGCATGTACACCTACTTTGC
CTCCAATGGTTTCTCCTTTGGTTCTTCCCATCAGAACTGGAAAGCTGTGAAGAACTTTTGTGATGCCAAC
AACCTCATGTTCATCCCCAGTGTGGGGCCTGGCTACATAGACACCAGCATTCGGCCCTGGAACAACCACA
ATACGCGCAACAGGGTCAATGGCAAGTACTATGAGACGGCCCTGCAGGCGGCCCTGACAGTGAGGCCCGA
GATCGTTTCCATTACCTCCTTCAATGAGTGGCACGAGGGCACCCAGATTGAGAAGGCCATTCCCAAGAAG
ACACCCACCCGCCTGTATTTGGACTACCTGCCTCACCAGCCCAGCCTGTACCTGGAGCTGACACGCCGCT
GGGCGGAGCACTTCATCAAAGAGAAGGAGCAGTGGCTCATGTGA

Translation (457 aa):
MARRRRRACIALFLVLLFAFGTLMGLRTLKAPDGLPALGPGLELAPFERRPEGAPAPAARAPAAPAAPPP
PPPPPRTADPGGSPGPAPAEAEPAPVQSLRVYSDLHAFYYSWYGSPRREGHYIHWDHVMVPHWDPKISAS
YPRGRHSPPDDLGSSFYPELGPYSSRDPEVLREHMTQLKEAAIGVLVLSWYPPGMADDNGEPSDDLVPAI
LDTAHQYSIQVAFHIQPYKGRDDITVHDNIKYIIDTYGSHGAFYRYKNSMGKSLPLFYIYDSYLTSPEAW
AHLLTPNGPHSIRNTPYDGVFIALLVEEGHTHDILAAGFDGMYTYFASNGFSFGSSHQNWKAVKNFCDAN
NLMFIPSVGPGYIDTSIRPWNNHNTRNRVNGKYYETALQAALTVRPEIVSITSFNEWHEGTQIEKAIPKK
TPTRLYLDYLPHQPSLYLELTRRWAEHFIKEKEQWLM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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