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Report for CCDS37017.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37017.1 Public Mus musculus 14 Slc15a1 23 108 98 CCDS HistoryNCBI Gene:56643Re-query CCDS DB by CCDS ID:37017.1Re-query CCDS DB by GeneID:56643See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37017.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088386.7 ENSMUSP00000085728.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088386.7Link to Ensembl Protein Viewer:ENSMUSP00000085728.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000088386Re-query CCDS DB by Protein ID:ENSMUSP00000085728
Original member Current member NCBI NM_053079.2 NP_444309.2 Accepted alive Link to Nucleotide Sequence:NM_053079.2Link to Protein Sequence:NP_444309.2Re-query CCDS DB by Nucleotide ID:NM_053079Re-query CCDS DB by Protein ID:NP_444309Link to BLAST:NP_444309.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444309.2 709 Q9JIP7 709 100% 0 0

Chromosomal Locations for CCDS 37017.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 121460582 121460773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121462467 121462574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121464903 121465046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121465882 121465990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121466120 121466227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121471278 121471327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121473006 121473155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121474546 121474665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121475965 121476046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121478059 121478147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121478231 121478263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121478392 121478436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121479969 121480058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121480656 121480742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121481747 121481829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121484848 121484931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121486637 121486727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121486994 121487093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121489790 121489909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121490993 121491134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121491229 121491310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121491674 121491690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 121505219 121505222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2130 nt):
ATGGGGATGTCCAAGTCTCGGGGTTGCTTCGGTTACCCGTTGAGCATCTTCTTCATCGTGGTCAATGAAT
TCTGTGAAAGATTCTCCTACTATGGCATGCGAGCACTCCTGGTTCTGTACTTCAGGAACTTCCTCGGCTG
GGACGACAATCTCTCCACGGCCATTTACCATACGTTCGTTGCCCTCTGCTACCTGACTCCAATTCTTGGA
GCTCTGATCGCAGACTCGTGGCTGGGGAAGTTCAAGACAATTGTTTCACTATCCATCGTCTACACGATTG
GACAAGCAGTCATCTCGGTGAGCTCAATTAATGACCTCACAGACCACGACCACAATGGCAGTCCTGACAG
CCTTCCCGTGCACGTAGCACTGTCCATGGTTGGCCTGGCCCTGATAGCCCTTGGTACAGGAGGAATCAAG
CCCTGTGTGTCTGCGTTTGGTGGCGATCAGTTTGAAGAGGGTCAGGAAAAACAGCGAAACCGGTTCTTTT
CCATCTTTTATTTGGCTATCAACGGGGGAAGCCTGCTCTCCACGATCATCACTCCCATACTCAGAGTTCA
ACAGTGCGGAATCCACAGTCAACAAGCTTGTTACCCACTGGCCTTCGGGGTTCCAGCGGCTCTCATGGCT
GTTGCCCTAATTGTGTTTGTCCTTGGCAGTGGAATGTACAAGAAGTTCCAGCCCCAGGGCAACATCATGG
GCAAAGTGGCCAAGTGCATTGGTTTTGCCATCAAAAACAGGTTTCGGCACCGAAGTAAGGCATATCCCAA
GAGGGAGCACTGGCTGGACTGGGCTAAAGAGAAATACGACGAGCGGCTCATCTCACAGATTAAGATGGTC
ACGAAGGTGATGTTCCTGTACATCCCACTCCCCATGTTCTGGGCCTTGTTTGACCAGCAGGGTTCCAGAT
GGACACTGCAAGCAACGACCATGAATGGGAAAATTGGAGCAATTGAAATTCAGCCGGACCAGATGCAGAC
GGTGAATGCCATCTTGATTGTCATCATGGTCCCCATTGTGGACGCTGTGGTGTACCCGCTCATTGCAAAA
TGTGGTTTCAACTTCACATCCCTGAAGAAGATGACTGTTGGGATGTTCCTGGCGTCCATGGCCTTTGTGG
TGGCTGCAATTGTGCAGGTGGAAATCGATAAAACTCTTCCAGTCTTCCCTGGTGGAAATCAAGTCCAAAT
TAAGGTCTTGAACATCGGAAACAATAACATGACCGTGCATTTTCCTGGAAATAGTGTGACGCTTGCCCAA
ATGTCTCAGACAGACACGTTCATGACTTTCGATATAGACAAGCTGACAAGCATAAACATATCTTCCTCTG
GATCCCCAGGAGTCACCACAGTAGCTCATGATTTTGAGCAGGGTCACCGGCACACCCTTCTAGTGTGGAA
CCCCAGTCAATACCGTGTGGTAAAAGATGGTCTTAACCAAAAGCCAGAGAAAGGGGAGAACGGAATCAGG
TTTGTCAACACCCTTAACGAGATGGTCACCATCAAAATGAGTGGGAAAGTATATGAAAATGTCACCAGTC
ACAACGCCAGCGGCTACCAGTTCTTCCCTTCTGGCGAAAAGCAGTACACAATAAACACCACGGCGGTGGC
ACCAACCTGTCTAACTGATTTTAAATCTTCCAACCTTGACTTTGGCAGCGCGTATACCTACGTGATCCGA
AGGGCGAGTGATGGCTGCCTGGAAGTGAAGGAATTTGAAGACATCCCACCCAACACTGTGAACATGGCTC
TGCAGATCCCACAGTACTTCCTTCTCACCTGCGGCGAGGTGGTCTTCTCTGTCACAGGACTGGAGTTCTC
TTATTCCCAGGCTCCGTCTAACATGAAGTCCGTGCTTCAGGCAGGCTGGCTTCTAACTGTGGCGGTCGGC
AATATCATTGTGCTCATCGTGGCAGGGGCGGGGCACTTCCCCAAACAGTGGGCTGAGTACATTCTGTTTG
CCTCATTGCTTCTGGTTGTCTGCGTGATATTCGCCATCATGGCTCGATTCTACACCTACATCAACCCAGC
AGAGATTGAAGCACAGTTTGATGAGGATGAGAAGAAAAAGGGCATAGGAAAGGAAAACCCGTATTCTTCA
TTGGAACCAGTCTCACAGACAAATATGTGA

Translation (709 aa):
MGMSKSRGCFGYPLSIFFIVVNEFCERFSYYGMRALLVLYFRNFLGWDDNLSTAIYHTFVALCYLTPILG
ALIADSWLGKFKTIVSLSIVYTIGQAVISVSSINDLTDHDHNGSPDSLPVHVALSMVGLALIALGTGGIK
PCVSAFGGDQFEEGQEKQRNRFFSIFYLAINGGSLLSTIITPILRVQQCGIHSQQACYPLAFGVPAALMA
VALIVFVLGSGMYKKFQPQGNIMGKVAKCIGFAIKNRFRHRSKAYPKREHWLDWAKEKYDERLISQIKMV
TKVMFLYIPLPMFWALFDQQGSRWTLQATTMNGKIGAIEIQPDQMQTVNAILIVIMVPIVDAVVYPLIAK
CGFNFTSLKKMTVGMFLASMAFVVAAIVQVEIDKTLPVFPGGNQVQIKVLNIGNNNMTVHFPGNSVTLAQ
MSQTDTFMTFDIDKLTSINISSSGSPGVTTVAHDFEQGHRHTLLVWNPSQYRVVKDGLNQKPEKGENGIR
FVNTLNEMVTIKMSGKVYENVTSHNASGYQFFPSGEKQYTINTTAVAPTCLTDFKSSNLDFGSAYTYVIR
RASDGCLEVKEFEDIPPNTVNMALQIPQYFLLTCGEVVFSVTGLEFSYSQAPSNMKSVLQAGWLLTVAVG
NIIVLIVAGAGHFPKQWAEYILFASLLLVVCVIFAIMARFYTYINPAEIEAQFDEDEKKKGIGKENPYSS
LEPVSQTNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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