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Report for CCDS33251.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33251.1 Public Homo sapiens 2 ARID5A 24 110 108 CCDS HistoryNCBI Gene:10865Re-query CCDS DB by CCDS ID:33251.1Re-query CCDS DB by GeneID:10865See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33251.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357485.8 ENSP00000350078.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357485.8Link to Ensembl Protein Viewer:ENSP00000350078.3Re-query CCDS DB by Nucleotide ID:ENST00000357485Re-query CCDS DB by Protein ID:ENSP00000350078
Original member Current member NCBI NM_212481.3 NP_997646.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_212481.3Link to Protein Sequence:NP_997646.1Re-query CCDS DB by Nucleotide ID:NM_212481Re-query CCDS DB by Protein ID:NP_997646Link to BLAST:NP_997646.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997646.1 594 Q03989-1 594 100% 0 0

Chromosomal Locations for CCDS 33251.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 96536827 96536830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96547402 96547517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96549321 96549459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96549753 96549805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96550188 96550285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96550574 96550733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96551099 96552313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1785 nt):
ATGGCAGCCCCTGTCAAAGGGAACAGGAAGCAGTCCACGGAGGGTGACGCCCTAGACCCACCTGCATCCC
CCAAACCTGCTGGCAAGCAGAACGGAATCCAGAACCCCATCTCGCTGGAGGACTCCCCCGAGGCAGGCGG
GGAGCGGGAGGAGGAGCAGGAGCGGGAGGAGGAGCAGGCCTTCCTGGTCAGCCTCTACAAGTTCATGAAG
GAGCGACACACGCCCATCGAGAGGGTGCCCCATCTCGGCTTCAAGCAGATTAACCTGTGGAAGATCTACA
AAGCAGTGGAGAAGCTGGGGGCCTATGAGCTGGTGACCGGGCGCCGCCTCTGGAAGAACGTGTACGACGA
GCTGGGGGGCAGCCCAGGCAGCACCAGCGCGGCCACGTGCACGCGCCGCCACTACGAGAGGCTGGTCCTG
CCATACGTGCGGCACCTGAAGGGGGAGGATGACAAGCCGCTGCCCACCTCCAAGCCCAGGAAACAGTACA
AGATGGCTAAGGAGAACAGGGGGGATGATGGGGCCACCGAGAGGCCGAAGAAGGCCAAGGAGGAGCGGCG
CATGGACCAGATGATGCCAGGAAAGACCAAAGCAGATGCTGCTGACCCAGCACCACTTCCCAGCCAGGAG
CCCCCCAGGAACAGCACAGAACAGCAGGGCCTGGCCTCTGGGTCTTCTGTGTCCTTTGTGGGTGCCAGCG
GCTGTCCTGAGGCCTACAAGCGGCTCCTATCCAGCTTCTACTGCAAGGGGACACACGGCATCATGTCACC
ACTGGCCAAAAAGAAGCTCCTGGCCCAGGTGAGCAAGGTGGAGGCCTTGCAGTGCCAGGAGGAGGGCTGC
CGCCATGGGGCAGAGCCCCAGGCGTCCCCAGCTGTTCACCTCCCAGAGAGTCCCCAGAGCCCCAAAGGGC
TGACTGAGAACTCCAGGCACCGGCTGACCCCTCAGGAGGGATTGCAGGCCCCAGGTGGCAGCCTCAGAGA
GGAGGCGCAGGCAGGCCCCTGCCCGGCAGCCCCCATCTTCAAGGGCTGCTTCTACACCCACCCCACCGAG
GTGCTGAAGCCTGTCAGCCAGCACCCCAGGGACTTCTTCTCTAGACTTAAAGATGGGGTGCTATTGGGGC
CTCCTGGCAAAGAGGGGCTGTCAGTGAAAGAGCCCCAGCTGGTGTGGGGCGGAGACGCTAACCGCCCTTC
TGCGTTCCATAAAGGTGGCTCCAGAAAGGGCATCCTCTACCCCAAGCCCAAAGCCTGCTGGGTGTCCCCC
ATGGCCAAGGTCCCAGCCGAGAGCCCCACGCTCCCGCCCACCTTCCCCAGTAGCCCAGGCCTGGGCAGCA
AGCGCAGCCTGGAGGAAGAGGGTGCTGCCCACAGTGGGAAGAGACTGCGGGCCGTGTCTCCCTTTCTTAA
GGAGGCGGATGCCAAGAAGTGTGGGGCCAAACCTGCAGGGTCCGGCCTGGTCTCCTGCCTTCTGGGCCCA
GCCCTGGGGCCTGTGCCCCCAGAGGCCTACAGGGGCACCATGCTGCACTGCCCGCTGAACTTCACTGGCA
CCCCGGGCCCCTTGAAGGGCCAGGCTGCACTCCCCTTCAGCCCCCTGGTCATCCCGGCCTTCCCGGCCCA
CTTCCTGGCCACCGCAGGCCCCTCGCCCATGGCCGCTGGCCTGATGCACTTCCCCCCAACGTCCTTCGAC
AGTGCCCTCCGCCACAGACTTTGCCCGGCCTCATCTGCCTGGCACGCACCACCAGTCACAACCTATGCAG
CGCCCCACTTCTTCCACCTCAACACCAAGCTGTAG

Translation (594 aa):
MAAPVKGNRKQSTEGDALDPPASPKPAGKQNGIQNPISLEDSPEAGGEREEEQEREEEQAFLVSLYKFMK
ERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVL
PYVRHLKGEDDKPLPTSKPRKQYKMAKENRGDDGATERPKKAKEERRMDQMMPGKTKADAADPAPLPSQE
PPRNSTEQQGLASGSSVSFVGASGCPEAYKRLLSSFYCKGTHGIMSPLAKKKLLAQVSKVEALQCQEEGC
RHGAEPQASPAVHLPESPQSPKGLTENSRHRLTPQEGLQAPGGSLREEAQAGPCPAAPIFKGCFYTHPTE
VLKPVSQHPRDFFSRLKDGVLLGPPGKEGLSVKEPQLVWGGDANRPSAFHKGGSRKGILYPKPKACWVSP
MAKVPAESPTLPPTFPSSPGLGSKRSLEEEGAAHSGKRLRAVSPFLKEADAKKCGAKPAGSGLVSCLLGP
ALGPVPPEAYRGTMLHCPLNFTGTPGPLKGQAALPFSPLVIPAFPAHFLATAGPSPMAAGLMHFPPTSFD
SALRHRLCPASSAWHAPPVTTYAAPHFFHLNTKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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