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Report for CCDS24153.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24153.1 Public Mus musculus 10 Mgat4c 23 108 98 CCDS HistoryNCBI Gene:67569Re-query CCDS DB by CCDS ID:24153.1Re-query CCDS DB by GeneID:67569See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24153.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020039.12 ENSMUSP00000020039.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020039.12Link to Ensembl Protein Viewer:ENSMUSP00000020039.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020039Re-query CCDS DB by Protein ID:ENSMUSP00000020039
Original member Current member EBI ENSMUST00000120748.1 ENSMUSP00000114010.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120748.1Link to Ensembl Protein Viewer:ENSMUSP00000114010.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120748Re-query CCDS DB by Protein ID:ENSMUSP00000114010
Original member Current member EBI ENSMUST00000163753.7 ENSMUSP00000131551.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163753.7Link to Ensembl Protein Viewer:ENSMUSP00000131551.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163753Re-query CCDS DB by Protein ID:ENSMUSP00000131551
Original member Current member EBI ENSMUST00000179929.7 ENSMUSP00000135959.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179929.7Link to Ensembl Protein Viewer:ENSMUSP00000135959.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179929Re-query CCDS DB by Protein ID:ENSMUSP00000135959
Original member NCBI NM_001162368.1 NP_001155840.1 Updated not alive Link to Nucleotide Sequence:NM_001162368.1Link to Protein Sequence:NP_001155840.1Re-query CCDS DB by Nucleotide ID:NM_001162368Re-query CCDS DB by Protein ID:NP_001155840
Current member NCBI NM_001162368.2 NP_001155840.1 Accepted alive Link to Nucleotide Sequence:NM_001162368.2Link to Protein Sequence:NP_001155840.1Re-query CCDS DB by Nucleotide ID:NM_001162368Re-query CCDS DB by Protein ID:NP_001155840Link to BLAST:NP_001155840.1
Original member NCBI NM_001162369.1 NP_001155841.1 Updated not alive Link to Nucleotide Sequence:NM_001162369.1Link to Protein Sequence:NP_001155841.1Re-query CCDS DB by Nucleotide ID:NM_001162369Re-query CCDS DB by Protein ID:NP_001155841
Current member NCBI NM_001162369.2 NP_001155841.1 Accepted alive Link to Nucleotide Sequence:NM_001162369.2Link to Protein Sequence:NP_001155841.1Re-query CCDS DB by Nucleotide ID:NM_001162369Re-query CCDS DB by Protein ID:NP_001155841Link to BLAST:NP_001155841.1
Original member NCBI NM_001205098.1 NP_001192027.1 Updated not alive Link to Nucleotide Sequence:NM_001205098.1Link to Protein Sequence:NP_001192027.1Re-query CCDS DB by Nucleotide ID:NM_001205098Re-query CCDS DB by Protein ID:NP_001192027
Current member NCBI NM_001205098.2 NP_001192027.1 Accepted alive Link to Nucleotide Sequence:NM_001205098.2Link to Protein Sequence:NP_001192027.1Re-query CCDS DB by Nucleotide ID:NM_001205098Re-query CCDS DB by Protein ID:NP_001192027Link to BLAST:NP_001192027.1
Original member NCBI NM_026243.4 NP_080519.2 Updated not alive Link to Nucleotide Sequence:NM_026243.4Link to Protein Sequence:NP_080519.2Re-query CCDS DB by Nucleotide ID:NM_026243Re-query CCDS DB by Protein ID:NP_080519
Current member NCBI NM_026243.5 NP_080519.2 Accepted alive Link to Nucleotide Sequence:NM_026243.5Link to Protein Sequence:NP_080519.2Re-query CCDS DB by Nucleotide ID:NM_026243Re-query CCDS DB by Protein ID:NP_080519Link to BLAST:NP_080519.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155840.1 478 Q9D306 478 100% 0 0
NP_001155841.1 478 Q9D306 478 100% 0 0
NP_001192027.1 478 Q9D306 478 100% 0 0
NP_080519.2 478 Q9D306 478 100% 0 0

Chromosomal Locations for CCDS 24153.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 102378158 102378304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102385006 102385153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102388222 102389363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGCTTAAATTTTATCAAATGAAATATATTTTTCAAATATTGGATAAAATGAGATGCTTGCGAAAACGGT
CTACAGTGTCATTCTTGGGGGTTCTTGTTGTTTTTCTACTATTCATGAACTTGTACATTGAAGATAGCTA
TGTTCTGGAAGGCGACAAGCAACTTATAAGGGAAACATCGACACACCAACTTAATTCTGAACGCTATGTT
CACACTTTCAAGGATTTATCAAACTTCTCAGGAACCATAAATGTCACTTATCGCTATCTGGCTGCCACAC
CTTTACAGAGAAAACGATATCTCACAATTGGACTTTCATCAGTGAAACGAAAAAAAGGAAATTATTTACT
TGACACAATCAAGTCAATTTTTGAACAGTCCAGCTATGAAGAACTAAAGGAAATTTCAGTCGTAGTACAT
CTAGCAGACTTCAATTCATCATGGCGAGATGCCATGGTCCAAGACATTACACAGAAATTTGCCCATCATA
TTATTGCAGGAAGATTAATGGTTATACATGCTCCTGAAGAATATTATCCAGTTCTGGATGGTCTTAAAAG
AAATTACAATGACCCAGAAGATAGAGTCAGATTTCGCTCCAAGCAAAACGTAGATTATGCTTTTCTGCTA
AATTTCTGTGCCAATACTTCTGACTATTACGTGATGCTTGAAGACGATGTTCGGTGTTCCAGAAATTTCT
TAACTGCCATCAAGAAAGTCATAGCATCCTTGGAAGGAACATACTGGGTAACTCTTGAGTTCTCTAAACT
TGGCTACATTGGTAAACTCTATCATTCTCACGATCTCCCACGTCTGGCCCATTTCTTATTAATGTTCTAT
CAAGAAATGCCCTGCGATTGGCTATTGACTCATTTCCGAGGGCTGCTGGCTCAGAAAAATGTGATTCGAT
TTAAACCTTCTCTCTTTCAGCACATGGGGTATTATTCATCCTATAAAGGAACAGAGAATAAACTGAAGGA
TGATGACTTTGAAGAAGAGTCCTTTGACATCCCTGATAACCCCCCAGCGAGTTTCTACACCAACATGAAT
GTCTTTGAAAACTATGAAGCAAGCAAGGCTTACAGTAGTGTTGATGAGTATTTTTGGGGAAAGTCACCTT
CAATGGGAGATACGTTCGTTATTGTATTTGAAAATCCGATTACAATTAAAAAAATTAAAGTGAATACTGG
AACAGAGGACCGGCAGAATGACATCTTACAACATGGAGCCCTAGATGTTGGGGAAAAACTTATTTTTAGC
AAACAAATAAGACAATGTGATACTTACTTAAGACTAGGGGAATTCAAAAATGGATACTTTGAAATGTCAG
ATGTGAATCAAAAAATTCCCTTTGACATACATTGCATGAGGATATGTGTTACCAAAACACAGAAAGAATG
GCTGATAATTAGAAGCATCAGTATTTGGACTTCCTAG

Translation (478 aa):
MLKFYQMKYIFQILDKMRCLRKRSTVSFLGVLVVFLLFMNLYIEDSYVLEGDKQLIRETSTHQLNSERYV
HTFKDLSNFSGTINVTYRYLAATPLQRKRYLTIGLSSVKRKKGNYLLDTIKSIFEQSSYEELKEISVVVH
LADFNSSWRDAMVQDITQKFAHHIIAGRLMVIHAPEEYYPVLDGLKRNYNDPEDRVRFRSKQNVDYAFLL
NFCANTSDYYVMLEDDVRCSRNFLTAIKKVIASLEGTYWVTLEFSKLGYIGKLYHSHDLPRLAHFLLMFY
QEMPCDWLLTHFRGLLAQKNVIRFKPSLFQHMGYYSSYKGTENKLKDDDFEEESFDIPDNPPASFYTNMN
VFENYEASKAYSSVDEYFWGKSPSMGDTFVIVFENPITIKKIKVNTGTEDRQNDILQHGALDVGEKLIFS
KQIRQCDTYLRLGEFKNGYFEMSDVNQKIPFDIHCMRICVTKTQKEWLIIRSISIWTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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