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Mgat4c MGAT4 family, member C [ Mus musculus (house mouse) ]

Gene ID: 67569, updated on 22-May-2018

Summary

Official Symbol
Mgat4cprovided by MGI
Official Full Name
MGAT4 family, member Cprovided by MGI
Primary source
MGI:MGI:1914819
See related
Ensembl:ENSMUSG00000019888 Vega:OTTMUSG00000031902
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
GntIVh; 9130411I17Rik
Expression
Biased expression in large intestine adult (RPKM 3.5), colon adult (RPKM 2.8) and 9 other tissues See more
Orthologs

Genomic context

See Mgat4c in Genome Data Viewer
Location:
10; 10 D1
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (101681487..102391851)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (101621492..101854103)

Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 35722 Neighboring gene methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase pseudogene Neighboring gene microRNA 3059 Neighboring gene Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 Neighboring gene neurotensin

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
transferase activity, transferring glycosyl groups IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C
Names
N-acetylglucosaminyltransferase IVc
N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase IVc
UDP-N-acetylglucosamine: alpha-1,3-D-mannoside beta-1,4-N-acetylglucosaminyltransferase IVc
gnT-IVc
mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
NP_001155840.1
NP_001155841.1
NP_001192027.1
NP_080519.2
XP_006514065.1
XP_006514066.1
XP_006514067.1
XP_006514068.1
XP_011241840.1
XP_011241841.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001162368.1NP_001155840.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C

    See identical proteins and their annotated locations for NP_001155840.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) differs in the 5' UTR compared to variant 4. All three variants encode the same protein.
    Source sequence(s)
    AC168058, AK033482, BB611341
    Consensus CDS
    CCDS24153.1
    UniProtKB/Swiss-Prot
    Q9D306
    Related
    ENSMUSP00000131551.1, ENSMUST00000163753.7
    Conserved Domains (1) summary
    pfam04666
    Location:64330
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region
  2. NM_001162369.1NP_001155841.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C

    See identical proteins and their annotated locations for NP_001155841.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 4. All three variants encode the same protein.
    Source sequence(s)
    AC168058, AK032009, AK033482
    Consensus CDS
    CCDS24153.1
    UniProtKB/Swiss-Prot
    Q9D306
    Related
    ENSMUSP00000020039.6, OTTMUSP00000042140, ENSMUST00000020039.12, OTTMUST00000079089
    Conserved Domains (1) summary
    pfam04666
    Location:64330
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region
  3. NM_001205098.1NP_001192027.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C

    See identical proteins and their annotated locations for NP_001192027.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) represents the longest transcript. All three variants encode the same protein.
    Source sequence(s)
    AC168058, AK018574, AK080684, CB846452, CD774691
    Consensus CDS
    CCDS24153.1
    UniProtKB/Swiss-Prot
    Q9D306
    Related
    ENSMUSP00000135959.1, ENSMUST00000179929.7
    Conserved Domains (1) summary
    pfam04666
    Location:64330
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region
  4. NM_026243.4NP_080519.2  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C

    See identical proteins and their annotated locations for NP_080519.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 4. All three variants encode the same protein.
    Source sequence(s)
    AC168058, AK033482
    Consensus CDS
    CCDS24153.1
    UniProtKB/Swiss-Prot
    Q9D306
    Related
    ENSMUSP00000114010.1, OTTMUSP00000042141, ENSMUST00000120748.1, OTTMUST00000079090
    Conserved Domains (1) summary
    pfam04666
    Location:64330
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

    Range
    101681487..102391851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006514002.1XP_006514065.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

    See identical proteins and their annotated locations for XP_006514065.1

    UniProtKB/Swiss-Prot
    Q9D306
    Conserved Domains (1) summary
    pfam04666
    Location:64330
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region
  2. XM_006514003.1XP_006514066.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

    See identical proteins and their annotated locations for XP_006514066.1

    UniProtKB/Swiss-Prot
    Q9D306
    Conserved Domains (1) summary
    pfam04666
    Location:64330
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region
  3. XM_006514005.2XP_006514068.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

    See identical proteins and their annotated locations for XP_006514068.1

    UniProtKB/Swiss-Prot
    Q9D306
    Conserved Domains (1) summary
    pfam04666
    Location:64330
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region
  4. XM_011243538.2XP_011241840.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

    See identical proteins and their annotated locations for XP_011241840.1

    UniProtKB/Swiss-Prot
    Q9D306
    Conserved Domains (1) summary
    pfam04666
    Location:64330
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region
  5. XM_011243539.1XP_011241841.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

    See identical proteins and their annotated locations for XP_011241841.1

    UniProtKB/Swiss-Prot
    Q9D306
    Conserved Domains (1) summary
    pfam04666
    Location:64330
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region
  6. XM_006514004.3XP_006514067.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

    See identical proteins and their annotated locations for XP_006514067.1

    UniProtKB/Swiss-Prot
    Q9D306
    Conserved Domains (1) summary
    pfam04666
    Location:64330
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region
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