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Report for CCDS24562.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24562.1 Public Mus musculus 11 Adra1b 23 108 98 CCDS HistoryNCBI Gene:11548Re-query CCDS DB by CCDS ID:24562.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24562.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067258.8 ENSMUSP00000070200.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067258.8Link to Ensembl Protein Viewer:ENSMUSP00000070200.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000067258Re-query CCDS DB by Protein ID:ENSMUSP00000070200
Original member Current member EBI ENSMUST00000167574.1 ENSMUSP00000129200.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167574.1Link to Ensembl Protein Viewer:ENSMUSP00000129200.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167574Re-query CCDS DB by Protein ID:ENSMUSP00000129200
Original member Current member NCBI NM_001284380.1 NP_001271309.1 Accepted alive Link to Nucleotide Sequence:NM_001284380.1Link to Protein Sequence:NP_001271309.1Re-query CCDS DB by Nucleotide ID:NM_001284380Re-query CCDS DB by Protein ID:NP_001271309Link to BLAST:NP_001271309.1
Original member Current member NCBI NM_001284381.1 NP_001271310.1 Accepted alive Link to Nucleotide Sequence:NM_001284381.1Link to Protein Sequence:NP_001271310.1Re-query CCDS DB by Nucleotide ID:NM_001284381Re-query CCDS DB by Protein ID:NP_001271310Link to BLAST:NP_001271310.1
Original member NCBI NM_007416.4 NP_031442.2 Updated not alive Link to Nucleotide Sequence:NM_007416.4Link to Protein Sequence:NP_031442.2Re-query CCDS DB by Nucleotide ID:NM_007416Re-query CCDS DB by Protein ID:NP_031442
Current member NCBI NM_007416.5 NP_031442.2 Accepted alive Link to Nucleotide Sequence:NM_007416.5Link to Protein Sequence:NP_031442.2Re-query CCDS DB by Nucleotide ID:NM_007416Re-query CCDS DB by Protein ID:NP_031442Link to BLAST:NP_031442.2

Chromosomal Locations for CCDS 24562.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 43775861 43776459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 43835140 43836088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGAATCCCGATCTGGACACCGGCCACAACACATCAGCACCTGCCCACTGGGGAGAGTTGAAAGATGCCA
ACTTCACTGGCCCCAACCAGACCTCGAGCAACTCCACACTGCCCCAGCTGGACGTCACCAGGGCCATCTC
TGTGGGCCTGGTGCTGGGCGCCTTCATCCTCTTTGCCATCGTGGGCAACATCTTGGTCATCCTGTCGGTG
GCCTGCAACCGGCACCTGCGGACGCCCACCAACTACTTCATTGTCAACCTGGCCATTGCTGACCTGCTGT
TGAGCTTCACAGTCCTGCCCTTCTCCGCTACCCTGGAAGTGCTCGGCTACTGGGTGCTGGGGCGCATCTT
CTGTGACATCTGGGCAGCGGTTGATGTCCTGTGTTGCACGGCCTCCATCCTGAGCCTATGTGCCATCTCC
ATTGACCGCTACATTGGGGTGCGATACTCTCTGCAGTACCCCACGCTGGTCACCCGCAGGAAGGCCATCT
TGGCGCTCCTCAGTGTGTGGGTCTTGTCCACGGTCATCTCCATCGGGCCTCTCCTTGGATGGAAAGAACC
TGCGCCCAATGACGACAAAGAATGTGGGGTCACAGAAGAACCCTTCTACGCCCTCTTTTCCTCCCTGGGC
TCCTTCTACATCCCACTGGCGGTCATCCTGGTCATGTACTGCCGAGTCTACATCGTGGCCAAGAGGACCA
CCAAGAATCTGGAGGCGGGAGTCATGAAGGAAATGTCCAACTCCAAAGAGCTGACCCTGAGAATCCACTC
TAAGAACTTTCATGAGGACACCCTCAGCAGTACCAAGGCCAAGGGCCACAACCCCAGGAGTTCCATAGCT
GTCAAACTTTTTAAGTTCTCCAGGGAAAAGAAAGCAGCCAAAACCTTGGGCATTGTAGTCGGAATGTTCA
TCTTATGTTGGCTCCCCTTCTTCATCGCTCTCCCACTTGGCTCCCTGTTCTCCACCCTAAAGCCCCCGGA
CGCCGTATTCAAGGTAGTGTTCTGGCTGGGCTACTTCAACAGCTGCCTCAACCCCATCATCTACCCGTGC
TCCAGCAAGGAGTTCAAACGCGCCTTCATGCGTATCCTGGGGTGCCAGTGCCGCGGTGGCCGTCGCCGCC
GCCGCCGTCGCCGTCTAGGAGGCTGCGCTTACACCTACCGGCCGTGGACCCGCGGCGGCTCGCTGGAGAG
GTCGCAGTCGCGGAAGGACTCTCTGGATGACAGTGGCAGCTGCATGAGCGGCAGCCAGCGGACCCTGCCC
TCGGCGTCACCCAGCCCGGGATACCTGGGTCGTGGAACGCAGCCACCCGTGGAGCTGTGCGCCTTCCCCG
AGTGGAAACCCGGAGCGCTGCTCAGCCTGCCAGAGCCTCCTGGCCGCCGCGGCCGCCTCGACTCCGGGCC
ACTCTTCACTTTCAAGCTCCTGGGCGAGCCTGAGAGCCCGGGGACCGAAGGCGACGCCAGCAATGGGGGC
TGCGACACCACAACTGACCTGGCCAACGGGCAGCCGGGCTTCAAGAGCAACATGCCCCTGGCGCCCGGGC
ACTTTTAG

Translation (515 aa):
MNPDLDTGHNTSAPAHWGELKDANFTGPNQTSSNSTLPQLDVTRAISVGLVLGAFILFAIVGNILVILSV
ACNRHLRTPTNYFIVNLAIADLLLSFTVLPFSATLEVLGYWVLGRIFCDIWAAVDVLCCTASILSLCAIS
IDRYIGVRYSLQYPTLVTRRKAILALLSVWVLSTVISIGPLLGWKEPAPNDDKECGVTEEPFYALFSSLG
SFYIPLAVILVMYCRVYIVAKRTTKNLEAGVMKEMSNSKELTLRIHSKNFHEDTLSSTKAKGHNPRSSIA
VKLFKFSREKKAAKTLGIVVGMFILCWLPFFIALPLGSLFSTLKPPDAVFKVVFWLGYFNSCLNPIIYPC
SSKEFKRAFMRILGCQCRGGRRRRRRRRLGGCAYTYRPWTRGGSLERSQSRKDSLDDSGSCMSGSQRTLP
SASPSPGYLGRGTQPPVELCAFPEWKPGALLSLPEPPGRRGRLDSGPLFTFKLLGEPESPGTEGDASNGG
CDTTTDLANGQPGFKSNMPLAPGHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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