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Report for CCDS5908.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
5908.1 |
Public |
Homo sapiens |
7 |
TMEM176B |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:28959](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:5908.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:28959](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 7 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 5908.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000326442.10 |
ENSP00000318409.5 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000326442.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000318409.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000326442](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000318409](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000429904.6 |
ENSP00000397810.2 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000429904.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000397810.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000429904](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000397810](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000447204.6 |
ENSP00000410269.2 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000447204.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000410269.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000447204](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000410269](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000434545.5 |
ENSP00000413531.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000434545.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000413531.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000434545](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000413531](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000492607.5 |
ENSP00000419258.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000492607.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000419258.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000492607](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000419258](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001101311.2 |
NP_001094781.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001101311.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001094781.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001101311](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001094781](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001094781.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001101312.2 |
NP_001094782.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001101312.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001094782.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001101312](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001094782](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001094782.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_014020.4 |
NP_054739.3 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_014020.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_054739.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_014020](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_054739](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_054739.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 5908.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (813 nt): ATGACGCAAAACACGGTGATTGTGAATGGAGTTGCTATGGCCTCTAGGCCATCCCAGCCCACCCACGTCA ACGTCCACATCCACCAGGAGTCAGCTTTGACACAACTGCTGAAAGCTGGAGGTTCTCTGAAGAAGTTTCT TTTTCACCCTGGGGACACTGTGCCTTCCACAGCCAGGATTGGTTATGAGCAGCTGGCTCTAGGGGTGACT CAGATATTGCTGGGGGTTGTGAGTTGTGTTCTTGGAGTGTGTCTCAGCTTGGGGCCCTGGACTGTGCTGA GTGCCTCAGGCTGTGCCTTCTGGGCGGGGTCTGTGGTGATCGCAGCAGGAGCTGGGGCCATTGTCCATGA GAAGCACCCGGGCAAACTTGCTGGCTATATATCCAGCCTGCTCACCCTGGCAGGCTTTGCTACAGCTATG GCTGCTGTTGTCCTCTGCGTGAATAGCTTCATCTGGCAAACTGAACCCTTTTTATACATCGACACTGTGT GTGATCGCTCAGACCCTGTCTTCCCTACCACTGGGTACAGATGGATGCGGCGAAGTCAAGAGAACCAATG GCAGAAGGAGGAGTGTAGAGCTTACATGCAGATGCTGAGGAAGTTGTTCACAGCAATCCGTGCCCTGTTC CTGGCTGTCTGTGTCTTGAAGGTCATTGTGTCCTTGGTTTCCTTGGGAGTAGGTCTTCGAAACTTGTGTG GCCAGAGCTCCCAGCCCCTGAATGAGGAAGGATCAGAGAAGAGGCTACTGGGGGAGAATTCAGTGCCCCC TTCGCCCTCTAGGGAGCAGACCTCCACTGCCATTGTCCTGTGA
Translation (270 aa): MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARIGYEQLALGVT QILLGVVSCVLGVCLSLGPWTVLSASGCAFWAGSVVIAAGAGAIVHEKHPGKLAGYISSLLTLAGFATAM AAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMRRSQENQWQKEECRAYMQMLRKLFTAIRALF LAVCVLKVIVSLVSLGVGLRNLCGQSSQPLNEEGSEKRLLGENSVPPSPSREQTSTAIVL
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