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Report for CCDS37039.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37039.1 Public Mus musculus 15 Lmbrd2 23 108 98 CCDS HistoryNCBI Gene:320506Re-query CCDS DB by CCDS ID:37039.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37039.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000227556.1 ENSMUSP00000154020.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227556.1Link to Ensembl Protein Viewer:ENSMUSP00000154020.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227556Re-query CCDS DB by Protein ID:ENSMUSP00000154020
Original member NCBI NM_177178.3 NP_796152.2 Updated not alive Link to Nucleotide Sequence:NM_177178.3Link to Protein Sequence:NP_796152.2Re-query CCDS DB by Nucleotide ID:NM_177178Re-query CCDS DB by Protein ID:NP_796152
Current member NCBI NM_177178.4 NP_796152.2 Accepted alive Link to Nucleotide Sequence:NM_177178.4Link to Protein Sequence:NP_796152.2Re-query CCDS DB by Nucleotide ID:NM_177178Re-query CCDS DB by Protein ID:NP_796152Link to BLAST:NP_796152.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796152.2 694 Q8C561-1 694 100% 0 0

Chromosomal Locations for CCDS 37039.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 9149032 9149205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9149455 9149552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9151484 9151579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9156206 9156373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9157213 9157423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9165788 9165862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9171097 9171210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9172057 9172240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9175124 9175305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9175786 9175919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9177652 9177757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9178262 9178359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9182485 9182588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9183910 9183956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9186596 9186701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9194675 9194801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9196656 9196716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2085 nt):
ATGAGTGGTGCGGCTTTAGGACTTGAGATTGTTTTTGTCTTTTTTCTGGCATTGTTCCTCCTGCATCGCT
AT
GGAGACTTTAAGAAACAGCACAGACTGGTAATCATCGGCACACTGCTTGCTTGGTATCTCTGCTTTCT
C
ATTGTCTTCATACTGCCGCTGGATGTCAGTACGACAATATATAACCGATGCAGGCATGCTGCTGCAAAT
TCC
AGCCCTCCTGAAAATACCAACGTTACGGGACTGGATGCATCTGTCACTCCAGCTCCAAGACAGCATC
CA
TGTTTCAAGCCGTGGAGTTACATTCCAGATGGAATCATGCCAATTTTCTGGAGGGTAGTTTATTGGAC
A
TCACAGTTTTTGACGTGGATCCTGTTACCTTTTATGCAGTCATATGCAAGATCTGGAGGTTTCTCCATC
ACC
GGCAAGATCAAAACAGCCCTGATTGAGAATGCCATCTATTACGGCACTTACTTGCTGATATTTGGAG
CA
TTTCTGATTTACGTAGCTGTAAACCCACGTTTGCATTTAGAATGGAACCAACTTCAGACGATTGGGAT
A
GCTGCTGCCAACACATGGGGTCTGTTTCTCCTTGTGTTATTATTGGGGTATGGATTGGTGGAAATTCCT
CGG
TCATACTGGAATGGAGCCAAAAGGGGTTATCTTCTTATGAAGACTTACTTTAAGGCAGCCAAACTGA
TG
ACAGAGAAGGCAGATGCAGAAGAGAATTTGGAGGATGTAATGGAGGAGGTTCGTAAAGTAAATGAGAG
C
ATCAAGTACAACCACCCACTGAGGAAGTGTGTAGACACAATACTTAAAAAGTGCCCTACAGATTATCAG
GAA
AAGATGGGTAGGAATATGGATGACTATGAAGATTTTGACGAAAAGCGCAATACCTACCCAAGTGAAA
AA
AGTTTGGTAAAATTGCATAAACAGGTGATTTATTCAGTTCAAAGGCACCGTCGGACTCAAGTGCAATG
G
CAGATTCTTTTGGAACAGGCATTCTATCTAGAAGATGTAGCAAAAAATGAAACTAGCGCAACTCACCAG
TTT
GTTCACACCTTTCAGTCACCTGAGCCAGAAAATCGATTTATCCAATATTTTTATAATCCTACTGTTG
AG
TGGTACTGGGAATGCCTTTTGCGTCCATGGTTTCACAGGACCCTTGCTGTGGTTTTGTCTATCTTCTC
T
GTGATTGTTGTGTGGTCAGAGTGTACCTTCTTTAGCACAACTCCTGTCTTATCCCTTTTTGCAGTATTC
ATA
CAGCTGGCAGAAAGAACATACAATTACATTTATATTGAGATTGCTTGCTTCCTTTCCATCTTCTTCT
TA
AGCATCTGTGTTTACTCTACTGTGTTCAGGATCCGCGTGTTTAACTACTACTACCTGGCCTCACACCA
T
CAGACCGATGCTTATAGCCTTCTGTTCAGTGGCATGTTATTTTGCCGTTTGACTCCTCCTTTATGTCTT
AAC
TTCTTGGGATTGACCCATATGGATTCATCCATCTCCCACCAGAATACCCAGCCAACTGCATATACAT
CT
ATCATGGGTTCCATGAAAGTTTTATCCTTTATTGCAGATGGATTCTATATATATTATCCTATGTTGGT
A
GTAATTCTCTGCATCGCTACGTATTTTAGTTTGGGCACCCGTTGTTTGAATCTGCTTGGTTTCCAGCAG
TTC
ATGGGAGATAATGATATGACATCAGATCTAGTTGATGAAGGAAAAGAATTAATCAGACGAGAGAAAA
GA
AAAAGGCAAAGACAAGAGGAAGGTGAAAATAGAAGAAGAGAGTGGAAAGAACGTTATGGACACAACAG
A
GAGGATTCCACTCGGAACAGAAACGTCCATCCTGACCCCAAAGAGTCAAATTTCTCAGACACGACTACC
AAC
TGGTCATCCAAATACACCAGGGCTAATAACAGGACTGAAAGAGACCGAATAGAACTTCTCCAGGATG
CT
GAGCCTCTGGATTTTAATGCAGAAACGTTTACGGATGAATCTCTGGAACCTGAGTCAGGAAGGTATCA
A
CCTGGTGGGCGATATCTCTCCATGTCTTCCAGTATAATATTTGAAGATATCTAA


Translation (694 aa):
MSGAALGLEIVFVFFLALFLLHRYGDFKKQHRLVIIGTLLAWYLCFLIVFILPLDVSTTIYNRCRHAAAN
S
SPPENTNVTGLDASVTPAP
RQHPCFKPWSYIPDGIMPIFWRVVYWTSQFLTWILLPFMQSYARSGGFSI
T
GKIKTALIENAIYYGTYLLIFGAFLIYVAVNPRLHLE
WNQLQTIGIAAANTWGLFLLVLLLGYGLVEIP
R
SYWNGAKRGYLLMKTYFKAAKLMTEKADAEENLEDVME
EVRKVNESIKYNHPLRKCVDTILKKCPTDYQ
E
KMGRNMDDYEDFDEKRNTYPSEKSLVKLHKQ
VIYSVQRHRRTQVQWQILLEQAFYLEDVAKNETSATHQ
F
VHTFQSPEPENRFIQYFYNPTV
EWYWECLLRPWFHRTLAVVLSIFSVIVVWSECTFFSTTPVLSLFAVF
I
QLAERTYNYIYIE
IACFLSIFFLSICVYSTVFRIRVFNYYYLASHHQTDAYSLLFSGMLFCRLTPPLCL
N
FLGLTHMDSSISHQNTQPTAYTS
IMGSMKVLSFIADGFYIYYPMLVVILCIATYFSLGTRCLNLLGFQQ
F
MGDNDMTSDLVDEGKELIRR
EKRKRQRQEEGENRRREWKERYGHNREDSTRNRNVHPDPKESNFSDTTT
N
W
SSKYTRANNRTERDRIELLQDAEPLDFNAETFTDESLEPESGRYQPGGRYLSMSSSIIFEDI



Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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